| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,986,094 – 2,986,163 |
| Length | 69 |
| Max. P | 0.938783 |
| Location | 2,986,094 – 2,986,163 |
|---|---|
| Length | 69 |
| Sequences | 5 |
| Columns | 79 |
| Reading direction | forward |
| Mean pairwise identity | 69.96 |
| Shannon entropy | 0.47899 |
| G+C content | 0.44883 |
| Mean single sequence MFE | -10.56 |
| Consensus MFE | -5.02 |
| Energy contribution | -5.22 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.938783 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2986094 69 + 22422827 ---------ACUCUUUCGUUUAG-GCCAUAUUUCGUGUUAACAUUUAACGCGCCCUAAAAGCAAUACCACCCCCCACCC ---------.........(((((-(........(((((((.....))))))).)))))).................... ( -9.00, z-score = -1.91, R) >droSim1.chrX 2111161 52 + 17042790 --------------UUCGUUUAG-GCCAUAUUUCGUGUUAACAUUUAACGCGCCCUAAAAGCCACCC------------ --------------........(-((.......(((((((.....)))))))........)))....------------ ( -10.56, z-score = -2.40, R) >droAna3.scaffold_12613 62222 72 - 519072 AUUUUUGGCCUUUAUUGGCCUCUCGCCAUAUUUCGUGUUAACAUUUAACGCACCCUAAAUACCAAGCCCCCC------- ...(((((..((((.((((.....))))......((((((.....))))))....))))..)))))......------- ( -13.60, z-score = -2.78, R) >droYak2.chrX 16385617 64 - 21770863 -------ACCAUCUUUCAUUUAG-GCCAUAUUUCGUGUUAACAUUUAACGCGCCCUAAAAGCAGCAACCCCC------- -------...........(((((-(........(((((((.....))))))).)))))).............------- ( -9.10, z-score = -1.88, R) >droSec1.super_10 2716311 57 + 3036183 ---------ACUCGUUCGUUUAG-GCCAUAUUUCGUGUUAACAUUUAACGCGCCCUAAAAGCCACCC------------ ---------.............(-((.......(((((((.....)))))))........)))....------------ ( -10.56, z-score = -1.90, R) >consensus _________ACUCUUUCGUUUAG_GCCAUAUUUCGUGUUAACAUUUAACGCGCCCUAAAAGCCACACC_CCC_______ .................................(((((((.....)))))))........................... ( -5.02 = -5.22 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:41 2011