| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,949,443 – 2,949,499 |
| Length | 56 |
| Max. P | 0.996908 |
| Location | 2,949,443 – 2,949,499 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 94.44 |
| Shannon entropy | 0.08692 |
| G+C content | 0.46188 |
| Mean single sequence MFE | -11.60 |
| Consensus MFE | -10.22 |
| Energy contribution | -10.22 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.76 |
| SVM RNA-class probability | 0.965719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2949443 56 + 22422827 GAUACGACAACAACCAUCGUCGUCGUCAGGCGGCUGCAAAACAGCAAUCAAAAUCA ((((((((..........))))).))).((..((((.....))))..))....... ( -12.60, z-score = -2.35, R) >droYak2.chrX 16357037 52 - 21770863 GAUACGACAACAAC----AUCGUCGUCAGGUGGCUGCAAAACAGCAAUCAAAAUCA ((((((((......----...)))))..(((.((((.....)))).)))...))). ( -12.00, z-score = -2.81, R) >droSec1.super_10 2688908 52 + 3036183 GAUACGACAACAAC----AUCGUCGUCAGGCGGCUGCAAAACAGCAAUCAAAAUCA ((((((((......----...)))))..((..((((.....))))..))...))). ( -10.90, z-score = -2.53, R) >droSim1.chrX 2086828 52 + 17042790 GAUACGACAACAAC----AUCGUCGUCAGGCGGCUGCAAAACAGCAAUCAAAAUCA ((((((((......----...)))))..((..((((.....))))..))...))). ( -10.90, z-score = -2.53, R) >consensus GAUACGACAACAAC____AUCGUCGUCAGGCGGCUGCAAAACAGCAAUCAAAAUCA ((((((((.............)))))..((..((((.....))))..))...))). (-10.22 = -10.22 + -0.00)
| Location | 2,949,443 – 2,949,499 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 94.44 |
| Shannon entropy | 0.08692 |
| G+C content | 0.46188 |
| Mean single sequence MFE | -13.80 |
| Consensus MFE | -15.49 |
| Energy contribution | -15.30 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.90 |
| Structure conservation index | 1.12 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.00 |
| SVM RNA-class probability | 0.996908 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2949443 56 - 22422827 UGAUUUUGAUUGCUGUUUUGCAGCCGCCUGACGACGACGAUGGUUGUUGUCGUAUC ...........((((.....)))).....(((((((((....)))))))))..... ( -17.10, z-score = -2.44, R) >droYak2.chrX 16357037 52 + 21770863 UGAUUUUGAUUGCUGUUUUGCAGCCACCUGACGACGAU----GUUGUUGUCGUAUC ...........((((.....))))......((((((((----...))))))))... ( -12.70, z-score = -1.87, R) >droSec1.super_10 2688908 52 - 3036183 UGAUUUUGAUUGCUGUUUUGCAGCCGCCUGACGACGAU----GUUGUUGUCGUAUC ...........((((.....))))......((((((((----...))))))))... ( -12.70, z-score = -1.64, R) >droSim1.chrX 2086828 52 - 17042790 UGAUUUUGAUUGCUGUUUUGCAGCCGCCUGACGACGAU----GUUGUUGUCGUAUC ...........((((.....))))......((((((((----...))))))))... ( -12.70, z-score = -1.64, R) >consensus UGAUUUUGAUUGCUGUUUUGCAGCCGCCUGACGACGAU____GUUGUUGUCGUAUC ...........((((.....)))).....(((((((((....)))))))))..... (-15.49 = -15.30 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:39 2011