| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,945,304 – 2,945,400 |
| Length | 96 |
| Max. P | 0.925618 |
| Location | 2,945,304 – 2,945,400 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 70.02 |
| Shannon entropy | 0.49001 |
| G+C content | 0.42518 |
| Mean single sequence MFE | -18.60 |
| Consensus MFE | -15.58 |
| Energy contribution | -15.14 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.925618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2945304 96 + 22422827 UUUUCGCUGUGGCACUCAAAGGGGCGCGACGGAACCCAAAUUCAAACUGCAUUUCACCCGCAAAAAAAUAUAUAUCAAGUUUCACACAUUUCCAGC------------------ .....(((((.((.(((....))).)).))((((.............(((.........)))................((.....))..)))))))------------------ ( -13.60, z-score = 0.91, R) >droSim1.chrX 2082757 87 + 17042790 UUUUCGCUGUGGCGCUCCAAGGGGCGCGACGGACCCCAAAUUCAAACUGCAUUUCACCCG--AAAAAAUAUAUAUCAUGUUUCACACAC------------------------- ((((((((((.((((((....)))))).)))).....((((.(.....).))))....))--)))).......................------------------------- ( -19.90, z-score = -1.19, R) >droSec1.super_10 2685010 95 + 3036183 UUUUCGCUGUGGCGCUCCAAGGGGCGCGACGGAACCCAAAUUCAAACUGCAUUUCACCCG--AAAAAAUAUAUAUCAAGUUUCACACACAUUUGCAG----------------- ......((((.((((((....)))))).))))..............(((((((((....)--))).............((.....)).....)))))----------------- ( -23.30, z-score = -1.99, R) >droYak2.chrX 16352699 109 - 21770863 -UUUUUUUGUGGUGCUCGAAGGGGCGCGACAGACCCCAAAUUCAAACUGCAUUUCAUCCA---AAAAAA-UACAUAAAGUACAAUAAAGUACAAUACAUAAAAUACAAUUUUAC -....(((((.((((((....)))))).)))))...........................---......-........((((......))))...................... ( -20.50, z-score = -2.21, R) >droEre2.scaffold_4690 373382 76 + 18748788 -UUUUUUUGUGGUGCUCGAAGGGGCGCAACGGACCCCAAAUUCAAACUGCAUUUCACUCA---AAAAAACUACACCAAGU---------------------------------- -((((((((.(((((((....))))))...((...))...................).))---))))))...........---------------------------------- ( -15.70, z-score = -0.53, R) >consensus UUUUCGCUGUGGCGCUCCAAGGGGCGCGACGGACCCCAAAUUCAAACUGCAUUUCACCCG__AAAAAAUAUAUAUCAAGUUUCACACAC_________________________ ......((((.((((((....)))))).)))).................................................................................. (-15.58 = -15.14 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:37 2011