| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,945,217 – 2,945,267 |
| Length | 50 |
| Max. P | 0.922283 |
| Location | 2,945,217 – 2,945,267 |
|---|---|
| Length | 50 |
| Sequences | 7 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.38000 |
| Mean single sequence MFE | -11.20 |
| Consensus MFE | -11.20 |
| Energy contribution | -11.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.922283 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2945217 50 + 22422827 AUAAAUGAAAUUCAAUUUGCUGCGCCAUUUGCGCAGACAGUCAACAACAA ................(((((((((.....)))))).))).......... ( -11.20, z-score = -1.65, R) >droSim1.chrX 2082672 50 + 17042790 AUAAAUGAAAUUCAAUUUGCUGCGCCAUUUGCGCAGACAGUCAACAACAA ................(((((((((.....)))))).))).......... ( -11.20, z-score = -1.65, R) >droSec1.super_10 2684925 50 + 3036183 AUAAAUGAAAUUCAAUUUGCUGCGCCAUUUGCGCAGACAGUCAACAACAA ................(((((((((.....)))))).))).......... ( -11.20, z-score = -1.65, R) >droYak2.chrX 16352612 50 - 21770863 AUAAAUGAAAUUCAAUUUGCUGCGCCAUUUGCGCAGACAGUCAACAACAA ................(((((((((.....)))))).))).......... ( -11.20, z-score = -1.65, R) >droEre2.scaffold_4690 373297 50 + 18748788 AUAAAUGAAAUUCAAUUUGCUGCGCCAUUUGCGCAGACAGUCAACAACAA ................(((((((((.....)))))).))).......... ( -11.20, z-score = -1.65, R) >dp4.chrXL_group1e 2425667 50 + 12523060 AUAAAUGAAAUUCAAUUUGCUGCGCCAUUUGCGCAGACAGUCAACAACAA ................(((((((((.....)))))).))).......... ( -11.20, z-score = -1.65, R) >droPer1.super_18 1296519 50 + 1952607 AUAAAUGAAAUUCAAUUUGCUGCGCCAUUUGCGCAGACAGUCAACAACAA ................(((((((((.....)))))).))).......... ( -11.20, z-score = -1.65, R) >consensus AUAAAUGAAAUUCAAUUUGCUGCGCCAUUUGCGCAGACAGUCAACAACAA ................(((((((((.....)))))).))).......... (-11.20 = -11.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:36 2011