| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,931,052 – 2,931,144 |
| Length | 92 |
| Max. P | 0.789552 |
| Location | 2,931,052 – 2,931,144 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 81.88 |
| Shannon entropy | 0.40811 |
| G+C content | 0.35239 |
| Mean single sequence MFE | -21.41 |
| Consensus MFE | -13.08 |
| Energy contribution | -13.56 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.789552 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2931052 92 + 22422827 UGUUGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACG-CGCAAAUGAAACAUAUGUAACAAAAUGUCUCCAAUGUAU .(((((..(((((((((((((((((((((((.......))))))))...))).-))))))))))((....))........))..))))).... ( -23.50, z-score = -1.89, R) >droSim1.chrX 2070002 91 + 17042790 -UAAGGCAACUUUAUUUGCGAUGUUCAGGCAUUGAAAAACACACAAACAGAUAAUUCAAACGAAACAUA-AAAACAAAAUGUUUACAAUGUAU -....((((......)))).........((((((...............((....)).....((((((.-........)))))).)))))).. ( -10.90, z-score = -0.60, R) >droSec1.super_10 2670892 92 + 3036183 UGUUGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACG-CGCAAAUGAAACAUAUGUAACAAAAUGUCUCCAAUGUAU .(((((..(((((((((((((((((((((((.......))))))))...))).-))))))))))((....))........))..))))).... ( -23.50, z-score = -1.89, R) >droYak2.chrX 16338349 92 - 21770863 UGUUGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACG-CGCAAAUGAAACAUAUGUAACAAAAUGUCUCCAAUGUAU .(((((..(((((((((((((((((((((((.......))))))))...))).-))))))))))((....))........))..))))).... ( -23.50, z-score = -1.89, R) >droEre2.scaffold_4690 358825 92 + 18748788 UGUGGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACG-CGCAAAUGAAACAUAUGUAACAAAAUGUCUCCAAUGUAU ((..((((..(((((((((((((((((((((.......))))))))...))).-))))))))))((....)).......))))..))...... ( -24.20, z-score = -1.97, R) >droAna3.scaffold_13248 4837861 92 - 4840945 UGUUGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACGCAAACAGACG-CGCAAAUGAAACAUAUGUAACAAAAUGUCUCCUCUAUAU ....((((..(((((((((((((((((((((.......))))))))...))).-))))))))))((....)).......)))).......... ( -21.00, z-score = -1.48, R) >dp4.chrXL_group1e 2409567 92 + 12523060 UGUCGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACG-CGCAAAUGAAACAUAUGUAACAAAAUGUCUCCUCGAUAU ((((((....(((((((((((((((((((((.......))))))))...))).-))))))))))((((.(......).))))....)))))). ( -23.10, z-score = -2.11, R) >droPer1.super_18 1279182 92 + 1952607 UGUCGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACG-CGCAAAUGAAACAUAUGUAACAAAAUGUCUCCUCGAUAU ((((((....(((((((((((((((((((((.......))))))))...))).-))))))))))((((.(......).))))....)))))). ( -23.10, z-score = -2.11, R) >droWil1.scaffold_181096 10069154 75 - 12416693 GGUUGGUAGCUUUAUUUGCGGUUUUGUGUAACUGUAAAUUACACAAACAUAUG-UAGCAACAGUACUUGUUUGUGU----------------- .............((((((((((......)))))))))).(((((((((..((-(....))).....)))))))))----------------- ( -18.50, z-score = -0.84, R) >droVir3.scaffold_12726 2562526 82 - 2840439 UGUUGGCAACUUUAUUUGCGGUUUUGUGUAACUGUAAAUUACACAAACAGACG-CGCAAAUGAAACAUAUGUAACCGA-UGUGU--------- .(((((....(((((((((((((((((((((.......))))))))...))).-))))))))))((....))..))))-)....--------- ( -22.10, z-score = -1.64, R) >droMoj3.scaffold_6308 1419964 82 - 3356042 UGUUGGCAACUUUAUUUGCGGUUUUGUGUAACUGUAAAUUACACAAACAGACG-CGCAAAUGAAACAUAUGUAACCGA-UGUGC--------- .(((((....(((((((((((((((((((((.......))))))))...))).-))))))))))((....))..))))-)....--------- ( -22.10, z-score = -1.66, R) >consensus UGUUGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACG_CGCAAAUGAAACAUAUGUAACAAAAUGUCUCCAAUGUAU ....(....)(((((((((((((((((((((.......))))))))...)))..))))))))))............................. (-13.08 = -13.56 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:29 2011