| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,853,177 – 2,853,241 |
| Length | 64 |
| Max. P | 0.926435 |
| Location | 2,853,177 – 2,853,241 |
|---|---|
| Length | 64 |
| Sequences | 8 |
| Columns | 77 |
| Reading direction | reverse |
| Mean pairwise identity | 75.04 |
| Shannon entropy | 0.45176 |
| G+C content | 0.32573 |
| Mean single sequence MFE | -16.51 |
| Consensus MFE | -7.50 |
| Energy contribution | -8.01 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.926435 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2853177 64 - 22422827 -------UACUUAGAGU-AGAGAUUGUGCUUC-----AUAUAUUGUAGCUGCAAUUUAUUAGGCAAAUCUCCUUAAA -------......(((.-.((((((.(((((.-----(((.(((((....))))).))).))))))))))))))... ( -16.00, z-score = -2.19, R) >droWil1.scaffold_181096 2251550 64 - 12416693 -------UGAUUGUUUGGAUUGGCUACGUCAUGU---AUUGCAUGUGGUUGCAAUUUAUUAAACAAAUCUUGUU--- -------.(((((((((((((((((((((((...---..)).)))))))..)))))...))))).)))).....--- ( -13.60, z-score = -1.14, R) >droSim1.chrX 1995245 63 - 17042790 -------UACUUAGAGU--GAGAUUGUGCUUC-----AUAUAUUGUAGCUGCAAUUUAUUAGGCAAAUCUCCUUAAA -------......(((.--((((((.(((((.-----(((.(((((....))))).))).))))))))))))))... ( -18.30, z-score = -3.23, R) >droSec1.super_10 2594693 70 - 3036183 UACUUAGUACUUAGAGU--GAGAUUGUGCUUC-----AUAUAUUGUAGCUGCAAUUUAUUAGGCAAAUCUCCUUAAA .............(((.--((((((.(((((.-----(((.(((((....))))).))).))))))))))))))... ( -18.30, z-score = -2.48, R) >droYak2.chrX 16260430 65 + 21770863 -------UACUUAAAGUGAGAGACUGUGCUUC-----AUAUAUUGUAGCUGCAAUUUAUUAGGCAUAUCUCCUUAAA -------......(((.((((...(((((((.-----(((.(((((....))))).))).))))))))))))))... ( -17.00, z-score = -2.50, R) >droEre2.scaffold_4690 278352 64 - 18748788 -------UACUUAGAGU-UGAGACCGUGCUUC-----AUAUAUUGUAGCUGCAAUUUAUUAGGCAAAUCUCCUUAAA -------......(((.-.((((...(((((.-----(((.(((((....))))).))).)))))..)))))))... ( -14.30, z-score = -1.89, R) >dp4.chrXL_group1e 2305035 66 - 12523060 -------UGAUUGGU---UGAGAUUGUGCUUCAUACGAUAUAUUGUAGCUGCAAUUUAUUAAGCAAAUCUCCCAAA- -------...((((.---.((((((.(((((.....((((.(((((....))))).))))))))))))))))))).- ( -17.30, z-score = -2.86, R) >droPer1.super_18 1176922 66 - 1952607 -------UGAUUGGU---UGAGAUUGUGCUUCAUACGAUAUAUUGUAGCUGCAAUUUAUUAAGCAAAUCUCCCAAA- -------...((((.---.((((((.(((((.....((((.(((((....))))).))))))))))))))))))).- ( -17.30, z-score = -2.86, R) >consensus _______UACUUAGAGU_AGAGAUUGUGCUUC_____AUAUAUUGUAGCUGCAAUUUAUUAGGCAAAUCUCCUUAAA ...................((((...(((((......(((.(((((....))))).))).)))))..))))...... ( -7.50 = -8.01 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:20 2011