Locus 12869

Sequence ID dm3.chrX
Location 2,849,394 – 2,849,486
Length 92
Max. P 0.753249
window17692

overview

Window 2

Location 2,849,394 – 2,849,486
Length 92
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 75.94
Shannon entropy 0.32277
G+C content 0.27904
Mean single sequence MFE -19.58
Consensus MFE -12.41
Energy contribution -11.97
Covariance contribution -0.44
Combinations/Pair 1.14
Mean z-score -1.94
Structure conservation index 0.63
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.59
SVM RNA-class probability 0.753249
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 2849394 92 - 22422827
GAAACGUUAUUAAUAUCCGAAUAUAUCAGAAUAAAAUACAAC----------------AUA------------ACGUAAAUUGUUGACAUUUGUGAAUUUCCAUAAGUCAAUAAUAUAGC
...(((((((................................----------------)))------------))))..(((((((((..(((((......))))))))))))))..... ( -13.65, z-score =  -1.49, R)
>droEre2.scaffold_4690 274495 119 - 18748788
GAAUCGUUAUUAAUAUCCGAAAAU-GGAAAGUAAAAUACAACAUAUGUACGUGUGUGUAUAUUUAUACACCGAACGUAAAUUGUUGACAUUUGUGAAUUUCCAUAAGUCAACAGUGUAGC
...............(((......-)))........(((....(((((.((.(((((((....))))))))).))))).(((((((((..(((((......))))))))))))))))).. ( -29.20, z-score =  -2.74, R)
>droYak2.chrX 16256562 105 + 21770863
AAAUCGUUAUUAAUAUCCGAAAAU-UAAAAGUAAAACACAAC--------------GUAUAUUUAUACAGCCAACGUAAAUUGUUGACAUUUGUGAAUUUCCAUAAGUCAACAGUAUAGC
....((((.(((((........))-)))..............--------------((((....))))....))))...(((((((((..(((((......))))))))))))))..... ( -15.90, z-score =  -1.60, R)
>consensus
GAAUCGUUAUUAAUAUCCGAAAAU_UAAAAGUAAAAUACAAC______________GUAUAUUUAUACA_C_AACGUAAAUUGUUGACAUUUGUGAAUUUCCAUAAGUCAACAGUAUAGC
...............................................................................(((((((((..(((((......))))))))))))))..... (-12.41 = -11.97 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:19 2011