| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,812,642 – 2,812,742 |
| Length | 100 |
| Max. P | 0.965245 |
| Location | 2,812,642 – 2,812,742 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 89.58 |
| Shannon entropy | 0.17528 |
| G+C content | 0.31800 |
| Mean single sequence MFE | -22.72 |
| Consensus MFE | -17.32 |
| Energy contribution | -17.56 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965245 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2812642 100 - 22422827 AAACCCGUCUUAUCUCGUAACUUUUUUUUUUUA-UUUGUUGAUGAUUUCUUUUAUUGACAAAAGUUUUUAGCGAUUUUUCGGGUAGAAGGGGUUACAAAAA .(((((.(..((((...................-(((((..((((......))))..))))).........(((....)))))))..).)))))....... ( -21.60, z-score = -1.90, R) >droSim1.chrX 1958224 90 - 17042790 --ACCCGUCUUAUCUCGUAGCUC--UUUUUUUA-UUUGUUGAUGAUUUCUUUUAUUGACAAAAGUUUUUAGCGAUUUUUCGUGUAGAAGGGGUUA------ --...............((((((--(((((...-(((((..((((......))))..)))))........((((....))))..)))))))))))------ ( -20.40, z-score = -2.57, R) >droSec1.super_10 2553818 91 - 3036183 --ACCCGUCUUAUCUCGUAACUC-UUUUUUUUA-UUUGUUGAUGAUUUCUUUUAUUGACAAAAGUUUUUAGCGAUUUUUCGUGUAGAAGGGGUUA------ --...............((((((-(((((....-(((((..((((......))))..)))))........((((....))))..)))))))))))------ ( -20.40, z-score = -2.76, R) >droYak2.chrX 16224198 94 + 21770863 -AACCCGUCUUAACUCGUAACUCUUUUUUUUAGUUUUGUUGAUGAUUUCUUUUAUUGACAAAAGUUUUUAGCGAGUUUUCGGGUAGAAGGGGCUA------ -..(((.(((..(((((.(((((.((.....(.((((((..((((......))))..)))))).)....)).)))))..)))))))).)))....------ ( -27.80, z-score = -3.65, R) >droEre2.scaffold_4690 235194 91 - 18748788 -AACUCGUCUUAUCUCGUAACUCUUUUUUUA---UUUGUUGAUGAUUUCUUUUAUUGACAAAAGUUUUUAGCGAGUUUUCGGGUAGAAGGGGCUA------ -..(((.(((...((((.(((((........---(((((..((((......))))..))))).((.....)))))))..)))).))).)))....------ ( -23.40, z-score = -3.02, R) >consensus _AACCCGUCUUAUCUCGUAACUCUUUUUUUUUA_UUUGUUGAUGAUUUCUUUUAUUGACAAAAGUUUUUAGCGAUUUUUCGGGUAGAAGGGGUUA______ ...(((.(((...((((.................(((((..((((......))))..))))).((.....)).......)))).))).))).......... (-17.32 = -17.56 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:17 2011