| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,736,490 – 2,736,585 |
| Length | 95 |
| Max. P | 0.500000 |
| Location | 2,736,490 – 2,736,585 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 89.33 |
| Shannon entropy | 0.18241 |
| G+C content | 0.38613 |
| Mean single sequence MFE | -22.76 |
| Consensus MFE | -19.26 |
| Energy contribution | -20.10 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 2736490 95 + 22422827 CUGGUAAAUUGUGGGAUUAGCCUGGGACUUGUUAACAAUGUUUCGUCGCUGAAGCCUUGAAUUAACAGUAUAUGUGUGAACAAAUAAUACAAUUU ...((.((((..(((.(((((.((..(((((....))).))..))..)))))..)))..)))).)).((((...((....))....))))..... ( -19.00, z-score = -0.49, R) >droEre2.scaffold_4690 164166 92 + 18748788 CUGGUAAAUUGUGGGAUUAGCCUGGGACUUGUUCACAAUGUUUCGGCGCUGAGGCCUUGAAUUAUCAGUAAAUGUGUGAACUAAUGCUAUUU--- (((((((.(((.((..((((((((..(((((....))).))..))).)))))..)).))).))))))).....((((......)))).....--- ( -25.80, z-score = -2.07, R) >droYak2.chrX 16153689 92 - 21770863 CUGGUAAAUUGUGGGAUUAGCCUGGGACUUGUUAACAAUGUUUCGUCGACGAGGCCUUGAAUUAUCAGUAGAUGUGUGAACAAAUACUAUUU--- (((((((.....(((.....)))(((.(((((..((........))..))))).)))....))))))).....((((......)))).....--- ( -19.60, z-score = -0.35, R) >droSec1.super_10 2485972 95 + 3036183 CUGGUAAAUUUUGGGAUUAGCCUGGGACUUGUUAACAAUGUUUCGGCGCUGAAGCCUUGAAUUAUCAGCAUAUGUGUGAGCAAAUAAUACUAUUU (((((((.(((.(((.((((((((..(((((....))).))..))).)))))..))).)))))))))).....((((.........))))..... ( -25.40, z-score = -1.96, R) >droSim1.chrX 1902939 95 + 17042790 CUGGUAAAUUGUGGGAUUAGCCUGGGACUUGUUAACAAUGUUUCGGCGCUGAAGCCUUGAAUUAUCGGCAUAUGUGUGAACAAAUAAUACUAUUU (((((((.(((.((..((((((((..(((((....))).))..))).)))))..)).))).)))))))..(((.((....)).)))......... ( -24.00, z-score = -1.71, R) >consensus CUGGUAAAUUGUGGGAUUAGCCUGGGACUUGUUAACAAUGUUUCGGCGCUGAAGCCUUGAAUUAUCAGUAUAUGUGUGAACAAAUAAUACUAUUU (((((((.((..((..((((((((..(((((....))).))..))).)))))..))..)).)))))))........................... (-19.26 = -20.10 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:13 2011