| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,725,872 – 2,725,937 |
| Length | 65 |
| Max. P | 0.988137 |
| Location | 2,725,872 – 2,725,937 |
|---|---|
| Length | 65 |
| Sequences | 3 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 56.92 |
| Shannon entropy | 0.61890 |
| G+C content | 0.45361 |
| Mean single sequence MFE | -16.33 |
| Consensus MFE | -12.97 |
| Energy contribution | -12.20 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.31 |
| SVM RNA-class probability | 0.988137 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2725872 65 + 22422827 UCUCUGAGUCCCUUACCUUUGGUAGGGGGAAACUGCAGAGUCGAUUAAAGGCUCGAUUGACCAAA ..(((((((((((((((...))))))))...))).))))(((((((........))))))).... ( -22.00, z-score = -1.90, R) >droSec1.super_43 270810 65 - 327307 UCUCUGAGUUUUUUACUACUGGUGCGAAAAAACUGCAGAGAAUUUCGAAAAACAAAACAACCAAA ((((((((((((((..((....))..)))))))).))))))........................ ( -13.30, z-score = -2.39, R) >droAna3.scaffold_13770 628024 55 - 865660 AACCUGAGUCUCUUACCACAGG--GGGGAAAACGUCAGGGU--------GUCUCGAUGGACCAAG ..(((((((.(((..((...))--..)))..)).)))))(.--------((((....)))))... ( -13.70, z-score = 0.77, R) >consensus UCUCUGAGUCUCUUACCACUGGU_GGGGAAAACUGCAGAGU___U__AAGACUCGAUCGACCAAA .(((((..(((((((((...)))))))))......)))))......................... (-12.97 = -12.20 + -0.77)
| Location | 2,725,872 – 2,725,937 |
|---|---|
| Length | 65 |
| Sequences | 3 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 56.92 |
| Shannon entropy | 0.61890 |
| G+C content | 0.45361 |
| Mean single sequence MFE | -15.53 |
| Consensus MFE | -8.19 |
| Energy contribution | -7.87 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.920880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2725872 65 - 22422827 UUUGGUCAAUCGAGCCUUUAAUCGACUCUGCAGUUUCCCCCUACCAAAGGUAAGGGACUCAGAGA .........((((........))))(((((.(((...(((.((((...)))).))))))))))). ( -19.10, z-score = -1.73, R) >droSec1.super_43 270810 65 + 327307 UUUGGUUGUUUUGUUUUUCGAAAUUCUCUGCAGUUUUUUCGCACCAGUAGUAAAAAACUCAGAGA .......((((((.....))))))((((((.((((((((.((.......)))))))))))))))) ( -15.10, z-score = -2.19, R) >droAna3.scaffold_13770 628024 55 + 865660 CUUGGUCCAUCGAGAC--------ACCCUGACGUUUUCCCC--CCUGUGGUAAGAGACUCAGGUU (((((....)))))..--------..(((((.(((((...(--(....))...)))))))))).. ( -12.40, z-score = 0.35, R) >consensus UUUGGUCAAUCGAGACUU__A___ACUCUGCAGUUUUCCCC_ACCAGUGGUAAGAGACUCAGAGA .........................(((((.((((((..((.......))...))))))))))). ( -8.19 = -7.87 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:11 2011