Locus 12858

Sequence ID dm3.chrX
Location 2,701,268 – 2,701,359
Length 91
Max. P 0.804333
window17678

overview

Window 8

Location 2,701,268 – 2,701,359
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 94.07
Shannon entropy 0.09330
G+C content 0.39672
Mean single sequence MFE -12.68
Consensus MFE -12.88
Energy contribution -12.62
Covariance contribution -0.25
Combinations/Pair 1.05
Mean z-score -0.92
Structure conservation index 1.02
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.74
SVM RNA-class probability 0.804333
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 2701268 91 - 22422827
UGUUUCGUUUUCUGCCCUGCAUUUUUUAUCGUGCUAAUUUGUGGUCUUCCUUUAUGACAAUCAAAUCUGGUUGCGUGUAAGUCUUACUUCC
..................((((........))))......((((.(((....((((.((((((....)))))))))).))).).))).... ( -11.30, z-score =  -0.20, R)
>droSim1.chrX 1884564 89 - 17042790
UGUUUCCUUC--UGCCCUGCAUUUUUUAUCGUGCUAAUUUGUGGUCUUCCUUUAUGACAAUCAACUCUGGUUGCGUGUAAGUCUCACUUCC
..........--......((((........))))......((((.(((....((((.((((((....)))))))))).))).).))).... ( -13.60, z-score =  -1.25, R)
>droSec1.super_10 2460656 89 - 3036183
UCUUUCCUUC--UGCCCUGCAUUUUUUAUCGUGCUAAUUUGUGGUCUUCCUUUAUGACAAUCAACUCUGGUUGCGUGUAAGUCUCACUUCC
..........--......((((........))))......((((.(((....((((.((((((....)))))))))).))).).))).... ( -13.60, z-score =  -1.61, R)
>droYak2.chrX 16126513 89 + 21770863
UGUAUCCUUU--UGCCUUGCAUUUUUUAUUGUGCUAAUUUGUGGUCUUCCUUUAUGACAAUCAACUCUGGUUGCGUGUAAGUCUUACUUCC
.(((....((--(((...((((........))))...................(((.((((((....))))))))))))))...))).... ( -12.20, z-score =  -0.64, R)
>consensus
UGUUUCCUUC__UGCCCUGCAUUUUUUAUCGUGCUAAUUUGUGGUCUUCCUUUAUGACAAUCAACUCUGGUUGCGUGUAAGUCUCACUUCC
..................((((........))))......((((.(((....((((.((((((....)))))))))).))).).))).... (-12.88 = -12.62 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:08 2011