| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,699,519 – 2,699,591 |
| Length | 72 |
| Max. P | 0.513150 |
| Location | 2,699,519 – 2,699,591 |
|---|---|
| Length | 72 |
| Sequences | 8 |
| Columns | 85 |
| Reading direction | forward |
| Mean pairwise identity | 84.66 |
| Shannon entropy | 0.28928 |
| G+C content | 0.50022 |
| Mean single sequence MFE | -22.82 |
| Consensus MFE | -13.50 |
| Energy contribution | -14.01 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513150 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2699519 72 + 22422827 GUGUAUUUCCGCCUGUUCACAGUUAAUUGCGGCUCAGCAGUUAAUCGUCAUUACGGA-----CACAUGUGGGACGCC-------- ((((...(((((.(((.....(((((((((......))))))))).(((......))-----)))).))))))))).-------- ( -21.20, z-score = -1.60, R) >droPer1.super_18 997242 83 + 1952607 CCGUAUUUCCGCCUGUUCACAGUUAAUUGCGGCUCAGCAGUUAAUCGUCAUUAAGGGGAGCCCACAUGUGGGCCAGAGUAUGC-- .(((((((((.(((....((.(((((((((......))))))))).)).....))))))(((((....)))))...)))))).-- ( -29.00, z-score = -2.76, R) >dp4.chrXL_group1e 2129326 83 + 12523060 CCGUAUUUCCGCCUGUUCACAGUUAAUUGCGGCUCAGCAGUUAAUCGUCAUUAAGGGGAGCCCACAUGUGGGCCAGAGUAUGC-- .(((((((((.(((....((.(((((((((......))))))))).)).....))))))(((((....)))))...)))))).-- ( -29.00, z-score = -2.76, R) >droAna3.scaffold_13248 4494865 80 - 4840945 GCGUAUUUCCGCCUGUUCACAGUUAAUUGCGGCUCAGCAGUUAAUCGUCAUUACGGA-----CACAUGUGGGACGUCGACUAGGC ..........(((((.((...(((((((((......)))))))))((((.(((((..-----....)))))))))..)).))))) ( -23.50, z-score = -1.32, R) >droEre2.scaffold_4690 133863 72 + 18748788 GUGUAUUUCCGCCUGUUCACAGUUAAUUGCGGCUCAGCAGUUAAUCGUCAUUACGGA-----CACAUGUGGGACGCC-------- ((((...(((((.(((.....(((((((((......))))))))).(((......))-----)))).))))))))).-------- ( -21.20, z-score = -1.60, R) >droYak2.chrX 16124814 72 - 21770863 GUGUAUUUCCGCCUGUUCACAGUUAAUUGCGGCUCAGCAGUUAAUCGUCAUUACGGA-----CACAUGUGGGACGCC-------- ((((...(((((.(((.....(((((((((......))))))))).(((......))-----)))).))))))))).-------- ( -21.20, z-score = -1.60, R) >droSim1.chrX 1882857 72 + 17042790 GUGUAUUUCCGCCUGUUCACAGUUAAUUGCGGCUCAGCAGUUAAUCGUCAUUACGGA-----CACAUGUGGGACGCC-------- ((((...(((((.(((.....(((((((((......))))))))).(((......))-----)))).))))))))).-------- ( -21.20, z-score = -1.60, R) >droWil1.scaffold_181096 10367199 64 - 12416693 GCGUAUUUCCGUCUGUUCACAGUUAAUUGCGGCUCAGCAGUUAAUCGUCAUUACGCA-----CACAUGU---------------- (((((.(..((.(((....)))((((((((......)))))))).))..).))))).-----.......---------------- ( -16.30, z-score = -2.61, R) >consensus GCGUAUUUCCGCCUGUUCACAGUUAAUUGCGGCUCAGCAGUUAAUCGUCAUUACGGA_____CACAUGUGGGACGCC________ .......(((((.(((.....(((((((((......)))))))))(((....)))........))).)))))............. (-13.50 = -14.01 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:07 2011