| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,664,779 – 2,664,918 |
| Length | 139 |
| Max. P | 0.846662 |
| Location | 2,664,779 – 2,664,918 |
|---|---|
| Length | 139 |
| Sequences | 8 |
| Columns | 152 |
| Reading direction | forward |
| Mean pairwise identity | 77.87 |
| Shannon entropy | 0.44806 |
| G+C content | 0.46905 |
| Mean single sequence MFE | -30.78 |
| Consensus MFE | -16.04 |
| Energy contribution | -15.95 |
| Covariance contribution | -0.09 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.846662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2664779 139 + 22422827 CCUCGUGUAGGCAACAUUUUUCAA-UUAACAGACGAACGAAAAAUGUAUGACAUGCCACACAUAGA--UACUCACUAAUACUA--CCAUGGUAGC--CACUCGACAUGAGAAACGGUGCCAGGCACCUCCCAACCUCCC-CCUGCCA----- ....((((.(((((((((((((..-.............)))))))))......)))))))).....--...............--...((((((.--..(((.....)))....(((((...)))))............-.))))))----- ( -31.46, z-score = -2.04, R) >droSim1.chrX 1851248 113 + 17042790 CCUCGUGUAGGCAACAUUUUUCAAGUUAACAGACGAACGAAAAAUGUAUGACAUGCCACAUAUGCAG-UACUCACUAAUACUA--CCAUGCUAGCAACACUCGACAUGAGAAACGG------------------------------------ .(((((((.(((((((((((((..(((....)))....)))))))))......)))).....(((((-((.............--...)))).))).......)))))))......------------------------------------ ( -25.29, z-score = -2.10, R) >droSec1.super_10 2424995 139 + 3036183 CCUCGUGUAGGCAACAUUUUUCAA-UUAACAGACGAACGAAAAAUGUAUGACAUGCCACACAUAGA--UACUCACUAAUACUA--CCAUGGUAGC--CACUCGACAUGAGAAACGGUGCCAGGCACCUCCCAAACACCC-CCUGCCA----- ....((((.(((((((((((((..-.............)))))))))......)))))))).....--...............--...((((((.--..(((.....)))....(((((...)))))............-.))))))----- ( -31.46, z-score = -2.13, R) >droYak2.chrX 16087546 139 - 21770863 CCUCGUGUAGGCAACAUUUUUCAA-UUAACAAACGAACGAAAAAUGUAUGACAUGCCACACAUAGA--UACUCACUAAUACUA--CCAUGCUAGC--CACUCGACAUGAGAAACGGUGCCAGGCACCUCCCACCGUCCC-ACUGCCA----- .(((((((.(((.(((((((((..-.............)))))))))....((((.......(((.--......)))......--.))))...))--).....)))))))..((((((..((....))..))))))...-.......----- ( -30.70, z-score = -2.23, R) >droEre2.scaffold_4690 91517 139 + 18748788 CCUCGUGUAGGCAACAUUUUUCAA-UUAACAAACGAACGAAAAAUGUAUGACAUGCCACACAUAGA--UACUCACUAAUACUA--CCAUGGUAGC--CACUCGACAUGAGAAACGGUGCCAGGCACCUCCCAAUCUCCC-CCAGCCA----- .(((((((.(((((((((((((..-.............)))))))))......)))).........--............(((--(....)))).--......)))))))....(((((...)))))............-.......----- ( -30.86, z-score = -2.18, R) >droAna3.scaffold_13248 4444143 144 - 4840945 CCUUAUGUAGGCAACAUUUUUCAA-UUAACAAACGAACGAAAAAUGUAUGACAUGCCACACAUAGA--CACUCACUAAUACCAUCCCAUGGCGAAGCCACUCGACAUGAGAAACGGUGCCAGGUACCCCACGCCUGCCUGCCUGCCC----- ......((((((((((((((((..-.............))))))))).......(((.....(((.--......)))......((.((((.(((......))).)))).))...)))(.(((((.......))))).))))))))..----- ( -32.56, z-score = -1.96, R) >dp4.chrXL_group1e 2048760 149 + 12523060 CUUCAUGUAGGCAACAUUUUUCAA-UUAACAAACGAACGAAAAAUAUAUGACAUGCCACCCAAAAGCACACACACACACAGCCGUCCAUAGGAGC--CACUCGACAUGAGAAACGGUGCCAGGCGGAACCCCCUGCCAAAGGCAUCUCGUCC .(((((((.(((...(((((((..-.............)))))))........(((.........)))............))).(((...)))..--......)))))))....((((((.(((((......)))))...))))))...... ( -32.66, z-score = -1.19, R) >droPer1.super_18 902795 149 + 1952607 CUUCAUGUAGGCAACAUUUUUCAA-UUAACAAACGAACGAAAAAUAUAAGACAUGCCACCCAAAAGCACACACACACACACCCGUCCAUAGGAGC--CACUCGACAUGAGAAACGGUGCCAGGCGGAACCCCCUGCCAAAGGCAUCUCGUCC .(((((((.(((...(((((((..-.............)))))))....................................((.......)).))--).....)))))))....((((((.(((((......)))))...))))))...... ( -31.26, z-score = -1.24, R) >consensus CCUCGUGUAGGCAACAUUUUUCAA_UUAACAAACGAACGAAAAAUGUAUGACAUGCCACACAUAGA__UACUCACUAAUACUA__CCAUGGUAGC__CACUCGACAUGAGAAACGGUGCCAGGCACCUCCCACCCUCCC_CCUGCCA_____ .(((((((.(((((((((((((................)))))))))......)))).......................(((........))).........)))))))...........((((.................))))...... (-16.04 = -15.95 + -0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:05 2011