| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,655,956 – 2,656,075 |
| Length | 119 |
| Max. P | 0.600564 |
| Location | 2,655,956 – 2,656,075 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 72.87 |
| Shannon entropy | 0.48101 |
| G+C content | 0.53181 |
| Mean single sequence MFE | -25.92 |
| Consensus MFE | -15.14 |
| Energy contribution | -16.58 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2655956 119 - 22422827 GUGAUAAAUGUCACCCAUCAAAUCAAAGUC--UUGGCCAUAAACGAGCUGAGUACUCAGUACCCACAACUCCUGCAGCGUCAUGCCCCCGUUGGGGCCAAAACCACCCGGAAAUCCCCAUC (((((....))))).............((.--((((((...((((.(((((....))))).............(((......)))...))))..)))))).)).....((......))... ( -28.40, z-score = -1.66, R) >droSec1.super_10 2417206 119 - 3036183 GUGAUAAAUGUCACCCAUCAAAUCAAAGUC--UUGGCCAUAAACGAGCUGAGUACUCAGUACCCACAACUCCUGCAACGUCAUGCCCCCGUUGGGGCCAGAACCACCCGGAAAUCCCCAUC (((((....))))).............((.--.(((((...((((.(((((....))))).............(((......)))...))))..)))))..)).....((......))... ( -27.50, z-score = -1.23, R) >droYak2.chrX 16077763 112 + 21770863 GUGAUAAAUGUCACCCAUCAAAUCAAAGUC--UUGGCCAUAAACGAGCUGAGUACUCAGUACCCACAUCUCCUGCAGCGUCAUGCUUCUG-UGGGGCCAGAACCUCUCUGAAAGU------ (((((....)))))........(((.((..--((((((........(((((....)))))..(((((......(((......)))...))-))))))))).....)).)))....------ ( -29.20, z-score = -1.36, R) >droEre2.scaffold_4690 82581 115 - 18748788 GUGAUAAAUGUCACCCAUCAAAUCAAAGUC--UUGGCCAUAAACGAGCUGAGUACUCAGUACCCACAUCUCCUGCAGCGCCAUGCCCCCA-UGGGGCCAG---CACCCCGAAAACGCCAUC (((((....)))))................--.((((.........(((((....)))))............(((.((.(((((....))-))).))..)---))..........)))).. ( -26.90, z-score = -1.08, R) >droAna3.scaffold_13248 4431330 94 + 4840945 -----AUAUGCAACUUGCGACAUCCCCAUCCACUGGCCAUAAACGAGCCGAGUACUCGUCACCCGCCAUCCUGGCUGCCCCUUGCCUCC--UGUGCCCUUC-------------------- -----...(((.....)))...........(((((((.....(((((.......))))).....))))....(((........)))...--.)))......-------------------- ( -17.60, z-score = -0.38, R) >consensus GUGAUAAAUGUCACCCAUCAAAUCAAAGUC__UUGGCCAUAAACGAGCUGAGUACUCAGUACCCACAACUCCUGCAGCGUCAUGCCCCCG_UGGGGCCAGAACCACCCGGAAAUC_CCAUC (((((....)))))..................((((((........(((((....)))))..(((........(((......)))......)))))))))..................... (-15.14 = -16.58 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:04 2011