| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,642,621 – 2,642,722 |
| Length | 101 |
| Max. P | 0.658999 |
| Location | 2,642,621 – 2,642,722 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 99.01 |
| Shannon entropy | 0.01676 |
| G+C content | 0.32871 |
| Mean single sequence MFE | -20.06 |
| Consensus MFE | -19.70 |
| Energy contribution | -20.30 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.658999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2642621 101 + 22422827 AGACAAAUUUCAUUCUUAGUCCUUGCCGCAGCCAAAGGAUUUGUCAAAGCAUAUGAAGAGACUAAAACUUGUUAAGUGAAAUCUCUUUUAUUUUUCUUUAU .(((((............((((((((....))..)))))))))))((((.....(((((((.....(((.....)))....))))))).......)))).. ( -16.70, z-score = -0.20, R) >droSim1.chrX 1832020 101 + 17042790 AGACAAAUUUCAUUCUUAGUCCUUGCCGCAGCCAAAGGAUUUGUCAAAGCAUAUGAAGAGACUAAAACUUGUUAAGUGAAAUCUCUUUUAUUUUGCUUUAU .(((((............((((((((....))..)))))))))))((((((...(((((((.....(((.....)))....))))))).....)))))).. ( -22.60, z-score = -1.91, R) >droSec1.super_10 2403744 101 + 3036183 AGACAAAUUUCAUUCUUAGUCCUUGCCGCAGCCAAAGGAUUUGUCAAAGCAUAUGAAGAGACUAAAACUUGUUAAGUGAAAUCUCUUUUAUUUUGCUUUAU .(((((............((((((((....))..)))))))))))((((((...(((((((.....(((.....)))....))))))).....)))))).. ( -22.60, z-score = -1.91, R) >droYak2.chrX 16063268 101 - 21770863 AGACAAAUUUCAUUCUUAGUCCUUGCCGCAGCCAAAGGAUUUGUCAAAGCAUAUGAAGAGACUAAAACUUGUUAAGUGAAAUCUCUUUUAUUUUGCCUUAU .(((((............((((((((....))..)))))))))))...(((...(((((((.....(((.....)))....))))))).....)))..... ( -19.20, z-score = -0.89, R) >droEre2.scaffold_4690 69078 101 + 18748788 AGACAAAUUUCAUUCUUAGUCCUUGCCGCAGCCAAAGGAUUUGUCAAAGCAUAUGAAGAGACUAAAACUUGUUAAGUGAAAUCUCUUUUAUUUUGCCUUAU .(((((............((((((((....))..)))))))))))...(((...(((((((.....(((.....)))....))))))).....)))..... ( -19.20, z-score = -0.89, R) >consensus AGACAAAUUUCAUUCUUAGUCCUUGCCGCAGCCAAAGGAUUUGUCAAAGCAUAUGAAGAGACUAAAACUUGUUAAGUGAAAUCUCUUUUAUUUUGCUUUAU .(((((............((((((((....))..)))))))))))((((((...(((((((.....(((.....)))....))))))).....)))))).. (-19.70 = -20.30 + 0.60)
| Location | 2,642,621 – 2,642,722 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 99.01 |
| Shannon entropy | 0.01676 |
| G+C content | 0.32871 |
| Mean single sequence MFE | -20.66 |
| Consensus MFE | -20.32 |
| Energy contribution | -20.28 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.03 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522803 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2642621 101 - 22422827 AUAAAGAAAAAUAAAAGAGAUUUCACUUAACAAGUUUUAGUCUCUUCAUAUGCUUUGACAAAUCCUUUGGCUGCGGCAAGGACUAAGAAUGAAAUUUGUCU ..((((....(((.((((((((..(((.....)))...))))))))..))).))))((((((((((...((....)).))))............)))))). ( -17.90, z-score = -0.26, R) >droSim1.chrX 1832020 101 - 17042790 AUAAAGCAAAAUAAAAGAGAUUUCACUUAACAAGUUUUAGUCUCUUCAUAUGCUUUGACAAAUCCUUUGGCUGCGGCAAGGACUAAGAAUGAAAUUUGUCU ..((((((......((((((((..(((.....)))...))))))))....))))))((((((((((...((....)).))))............)))))). ( -21.50, z-score = -1.33, R) >droSec1.super_10 2403744 101 - 3036183 AUAAAGCAAAAUAAAAGAGAUUUCACUUAACAAGUUUUAGUCUCUUCAUAUGCUUUGACAAAUCCUUUGGCUGCGGCAAGGACUAAGAAUGAAAUUUGUCU ..((((((......((((((((..(((.....)))...))))))))....))))))((((((((((...((....)).))))............)))))). ( -21.50, z-score = -1.33, R) >droYak2.chrX 16063268 101 + 21770863 AUAAGGCAAAAUAAAAGAGAUUUCACUUAACAAGUUUUAGUCUCUUCAUAUGCUUUGACAAAUCCUUUGGCUGCGGCAAGGACUAAGAAUGAAAUUUGUCU ..((((((......((((((((..(((.....)))...))))))))....))))))((((((((((...((....)).))))............)))))). ( -21.20, z-score = -1.00, R) >droEre2.scaffold_4690 69078 101 - 18748788 AUAAGGCAAAAUAAAAGAGAUUUCACUUAACAAGUUUUAGUCUCUUCAUAUGCUUUGACAAAUCCUUUGGCUGCGGCAAGGACUAAGAAUGAAAUUUGUCU ..((((((......((((((((..(((.....)))...))))))))....))))))((((((((((...((....)).))))............)))))). ( -21.20, z-score = -1.00, R) >consensus AUAAAGCAAAAUAAAAGAGAUUUCACUUAACAAGUUUUAGUCUCUUCAUAUGCUUUGACAAAUCCUUUGGCUGCGGCAAGGACUAAGAAUGAAAUUUGUCU ..((((((......((((((((..(((.....)))...))))))))....))))))((((((((((...((....)).))))............)))))). (-20.32 = -20.28 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:03 2011