| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,632,856 – 2,632,953 |
| Length | 97 |
| Max. P | 0.878447 |
| Location | 2,632,856 – 2,632,953 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 64.58 |
| Shannon entropy | 0.67009 |
| G+C content | 0.48482 |
| Mean single sequence MFE | -28.30 |
| Consensus MFE | -10.23 |
| Energy contribution | -10.18 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.65 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.878447 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2632856 97 + 22422827 CGCAGCGAUGCCCGCUCGGUUGUUUUACAG------CCGCCAAUGGCUAGUUCUAGCCGCAGCUUUCGUUUCCUGGCUGCUUUCCAGCUAAAUGCGUACCCUU ((((((((.((..((.((((((.....)))------))).....(((((....))))))).))..))))....((((((.....))))))..))))....... ( -33.00, z-score = -1.90, R) >droEre2.scaffold_4690 59695 97 + 18748788 CACAGUGAUGCCCGCCAGGCUGUUUUCCAG------CCGGCAAUGGCUAGUUCUACCUGCAGCUUUCGUUUCUUGGCUGUUUUCCAGCUAAAUGAGUACGUUU ..(((.((.(((.(((.(((((.....)))------)))))...)))....))...)))..(..((((((...((((((.....))))))))))))..).... ( -28.20, z-score = -0.84, R) >droYak2.chrX 16053992 103 - 21770863 CUCAGUAAUGCCCGCUGGGCUGCUUACCAGUAAGUACCACUAAUAGCUAGUUCUAGCUGAAGCUUUCGUUACUUGGCGAUUUUCCCGCUAAAUGCGUACUUAU ....((((.((((...))))...))))..((((((((......((((((....))))))........((...((((((.......))))))..)))))))))) ( -27.70, z-score = -1.03, R) >droSec1.super_10 2394742 97 + 3036183 CGCAGCGAUGCCCGCCCGGCUGUUUUACAG------CCGACAAUGGCUAGUUCUAGCCGCAGAUUUCGUUUCCUGGCUGCUUUCCAGCUAAAUGCGUACCCUU ((((((((...(.((.((((((.....)))------))).....(((((....))))))).)...))))....((((((.....))))))..))))....... ( -33.80, z-score = -2.42, R) >droSim1.chrX 1823339 97 + 17042790 CGCAGCGAUGCCCGCCCGGCUGUUUUACAG------CCGACAAUGGCUAGUUCUAGCCGCAGCUUUCGUUUCCUGGCUGCUUUCCAGCUAAAUGCGUACCCUC ((((((((.((..((.((((((.....)))------))).....(((((....))))))).))..))))....((((((.....))))))..))))....... ( -35.90, z-score = -2.83, R) >droWil1.scaffold_181096 1944550 74 + 12416693 -CCAAAAAUGGCAACACAUUUAAAUUUGAA-------UAAUUGAAUCGAAUAGAAAUUGUUAUUUUUGCUUUGAAAUCUCUG--------------------- -.(((((((((((....((((..((((((.-------........))))))..)))))))))))))))..............--------------------- ( -11.20, z-score = -1.23, R) >consensus CGCAGCGAUGCCCGCCCGGCUGUUUUACAG______CCGACAAUGGCUAGUUCUAGCCGCAGCUUUCGUUUCCUGGCUGCUUUCCAGCUAAAUGCGUACCCUU .(((((...(....)...))))).....................(((((....)))))((((((..........))))))....................... (-10.23 = -10.18 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:10:00 2011