| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,807,995 – 9,808,045 |
| Length | 50 |
| Max. P | 0.997934 |
| Location | 9,807,995 – 9,808,045 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 78.50 |
| Shannon entropy | 0.32736 |
| G+C content | 0.31353 |
| Mean single sequence MFE | -8.47 |
| Consensus MFE | -6.38 |
| Energy contribution | -7.88 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.25 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.21 |
| SVM RNA-class probability | 0.997934 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9807995 50 - 23011544 AAUUAAUUUGCUAAUUGCAAAUUGAUUUCC-----AUUCCCUGUGAAUACCCAUG-- (((((((((((.....)))))))))))..(-----((.....)))..........-- ( -9.70, z-score = -4.11, R) >dp4.chr4_group3 11327731 51 + 11692001 ------UUUGCCCAUUGCAAAUGAAUUUCCUAUGAAUUCUCUAUGAAUAUGAAUAUG ------(((((.....))))).((((((.....)))))).................. ( -4.80, z-score = -0.68, R) >droSec1.super_3 5254842 50 - 7220098 AAUUAAUUUGCUAAUUGCAAAUUGAUUUCC-----AUUCCCUGUGAAUACCCAUG-- (((((((((((.....)))))))))))..(-----((.....)))..........-- ( -9.70, z-score = -4.11, R) >droSim1.chr2L 9589586 50 - 22036055 AAUUAAUUUGCUAAUUGCAAAUUGAUUUCC-----AUUCCCUGUGAAUACCCAUG-- (((((((((((.....)))))))))))..(-----((.....)))..........-- ( -9.70, z-score = -4.11, R) >consensus AAUUAAUUUGCUAAUUGCAAAUUGAUUUCC_____AUUCCCUGUGAAUACCCAUG__ (((((((((((.....)))))))))))........((((.....))))......... ( -6.38 = -7.88 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:59 2011