| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,597,699 – 2,597,816 |
| Length | 117 |
| Max. P | 0.616325 |
| Location | 2,597,699 – 2,597,816 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 122 |
| Reading direction | reverse |
| Mean pairwise identity | 73.59 |
| Shannon entropy | 0.50875 |
| G+C content | 0.51936 |
| Mean single sequence MFE | -37.88 |
| Consensus MFE | -18.36 |
| Energy contribution | -21.62 |
| Covariance contribution | 3.26 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2597699 117 - 22422827 GGCGAUAAAAAG--CCGCCGCUGGCAGAAGCUUCGGGCUCUGAUUG-UUGUUUACGUGUCGCCCGGUCCAGUGGAGUCG--UCUUCAUUUGCGCUCUUCUGCUUUUCUGGCCAACUUGAAGG (((........)--))((((..((((((((...(((((...(((((-(.....))).))))))))((.((((((((...--.))))).))).)).))))))))....))))........... ( -37.20, z-score = -0.03, R) >droSim1.chrX 1800820 117 - 17042790 GGCGAUAAAAAG--CCGCCGCUGGCAGAAGCUUCGGGCUCUGAUUG-UUGUUUACGUGUCGCCCGGUCCGGUGGAGUCG--UCUUCAUUUGCGCUCUUCUGCUUUUGUGGCCAACUUGAAGG (((........)--))(((((.((((((((...(((((...(((((-(.....))).))))))))(((..((((((...--.))))))..).)).))))))))...)))))........... ( -41.00, z-score = -0.83, R) >droSec1.super_10 2359275 117 - 3036183 GGCGAUAAAAAG--CCGCCGCUGGCAGAAGCUUCGGGCUCUGAUUG-UUGUUUACGUGUCGCCCGGUCCGGUGGAGUCG--UCUUCAUUUGCGCUCUUCUGCUUUUGUGGCCAACUUGAAAG (((........)--))(((((.((((((((...(((((...(((((-(.....))).))))))))(((..((((((...--.))))))..).)).))))))))...)))))........... ( -41.00, z-score = -1.18, R) >droYak2.chrX 16018270 119 + 21770863 GGCGAUAAAAAAAGUCGCCGCUGGCAGAAGCUUCGGGCUCUGAUUG-UUGUUUACGUGUCGACCGGUCCGGUGGAGUCG--UCUUAACUAGUGCUCUUCUGCUUCUCUGGCCGAAUUGAACG ((((((.......))))))((..(.((((((...((((.(((...(-(((...(((..((.((((...)))).))..))--)..))))))).))))....)))))))..))........... ( -42.00, z-score = -2.02, R) >droEre2.scaffold_4690 24227 118 - 18748788 GGCGAUAAAAAAA-UCGCCGCUGGCAGAAGCUUCGGGCUCUGAUUG-UUGUUUACGUGUCGCCCGGUCCGGUGGAGUCG--UCUUCACUUGUGCUCUUCUGCUUUUCUGGCCAAUUUGAACG ((((((......)-)))))(((((((((((...(((((...(((((-(.....))).))))))))(..((((((((...--.)))))).))..).)))))))).....)))........... ( -39.80, z-score = -1.94, R) >droMoj3.scaffold_6473 13301721 102 - 16943266 AAAAACAACAAAACACGAUAAAACUGGACGCAAUAUGAGCUGAAAGCUUGUUUACGUGUCCGUGUCUUCUUCAUAGCCGAACAAUCGUUGAAGACACAACGC-------------------- ...............((........((((((...(..(((.....)))..)....))))))((((((((....................))))))))..)).-------------------- ( -26.25, z-score = -2.55, R) >consensus GGCGAUAAAAAA__CCGCCGCUGGCAGAAGCUUCGGGCUCUGAUUG_UUGUUUACGUGUCGCCCGGUCCGGUGGAGUCG__UCUUCAUUUGCGCUCUUCUGCUUUUCUGGCCAACUUGAACG ((((...........))))(((((((((((..((((((...(((....((....)).)))))))))...(((((((......)))))))......)))))))).....)))........... (-18.36 = -21.62 + 3.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:53 2011