| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,588,050 – 2,588,140 |
| Length | 90 |
| Max. P | 0.596532 |
| Location | 2,588,050 – 2,588,140 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 76.26 |
| Shannon entropy | 0.41154 |
| G+C content | 0.38178 |
| Mean single sequence MFE | -21.30 |
| Consensus MFE | -11.12 |
| Energy contribution | -10.52 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2588050 90 + 22422827 CUGGGAAAACUGGAAAAACAUCGCUUUUGAUC--------------UUUUCCAUUA----UAAAUUUGAACUUAAACGAGUCGAAUAAAAGGCAUUCUCCUUCCUACA .((((((...(((((((..((((....)))).--------------)))))))...----...((((((.(((....)))))))))..............)))))).. ( -16.20, z-score = -1.44, R) >droSim1.chrX_random 1365632 101 + 5698898 CUGGGAAAACUGGAAAAACAUCGCCUUUGAUCAGAGAUCAUAC---UUUUCCAUUA----UAAAUUUGAACUUAAACGAGUCGAAUAAAAGGCAUUCUCCUUCCUACA .((((((...((......))..((((((((((...))))....---..........----...((((((.(((....))))))))).)))))).......)))))).. ( -19.40, z-score = -1.45, R) >droSec1.super_10 2349574 101 + 3036183 CUGGGAAAACUGGAAAAACAUCGCCUUUGAUCGGAGAUCAUAC---UUUUCCAUUA----UAAAUUUGAACUUAAACGAGUCGAAUAAAAGGCAUUCUCCUUCCUACA .((((((...((......))..((((((....(((((......---.)))))....----...((((((.(((....))))))))).)))))).......)))))).. ( -22.30, z-score = -2.13, R) >droYak2.chrX 16008260 80 - 21770863 CUGGGAAAACUGGAAAAACAUCGCUGUCGAUCG------------------CAG-A----GACAUUUGAACUUAUUCGAGUCGCAU-----GCAUUUUCCUUCCUAAA .((((((....((((((..((((....)))).(------------------((.-.----(((..(((((....))))))))...)-----)).)))))))))))).. ( -19.60, z-score = -1.53, R) >droEre2.scaffold_4690 14266 108 + 18748788 CUGGGAAAACUGGAAAAAUAUCACUUUUGAUCGCAGCGAUCAUACUACUUCCAUUAAAUGUACGUUUGAACUCAUGCGAGUCGAGUGGAAGGCAGUUUCCUUCCUACA .(((((((((((...............((((((...)))))).....((((((((..((...(((.((....)).))).))..)))))))).)))))...)))))).. ( -29.00, z-score = -2.10, R) >consensus CUGGGAAAACUGGAAAAACAUCGCUUUUGAUCG_AG_____A____UUUUCCAUUA____UAAAUUUGAACUUAAACGAGUCGAAUAAAAGGCAUUCUCCUUCCUACA .((((((....(((.....((((....))))................................((((((.(((....)))))))))...........))))))))).. (-11.12 = -10.52 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:50 2011