| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,557,500 – 2,557,608 |
| Length | 108 |
| Max. P | 0.975900 |
| Location | 2,557,500 – 2,557,608 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 83.79 |
| Shannon entropy | 0.26689 |
| G+C content | 0.40776 |
| Mean single sequence MFE | -29.94 |
| Consensus MFE | -22.17 |
| Energy contribution | -22.65 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.975900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2557500 108 + 22422827 UGAUAGCGAUGCAACCAAGUGAUUAGUGAUUAGUGUUGCUAUUUUCGUCACU----UACAGCGAUGGAAAUGUUUUUUAUUUAGCAUUUGCCCAGCUGUUUUUCCAUUGCCG----- .....((((((.....((((((((((..((....))..))).....))))))----)(((((...(((((((((........))))))).))..))))).....))))))..----- ( -30.50, z-score = -3.22, R) >droEre2.scaffold_4644 2504095 100 + 2521924 UGAGGGCGAUGCCA-------ACAACUGAUUAGUGUUGCUAUUUUCGUCAGU----UACAGCGAUGGAAAUGUUUC--AUUUAGCAUUUGCCCAGCUGUUU-UCCAUUGCCGCC--- ....(((((((...-------..((((((((((.....))).....))))))----)(((((...(((((((((..--....))))))).))..)))))..-..)))))))...--- ( -30.80, z-score = -2.41, R) >droYak2.chrX 15976236 106 - 21770863 UGAGGGCGAUGC-A-------ACAACUGAUUAGUGUUGCUAUUUACAUCAGUCGGUUACAGCGAUGGAAAUGUUUU--AUUUAGCAUUUGUCCAGCUGUUU-UCCAUUGCCGUUUUC .((.(((((((.-.-------..((((((((.((((........)))).))))))))(((((..((((((((((..--....))))))..)))))))))..-..))))))).))... ( -34.40, z-score = -3.63, R) >droSec1.super_10 2322592 100 + 3036183 UGAUAGCGAUGCAAC-AGGUGAUUAGUGAUUAGUGUUGCUAUUUUCGUCAGU----UACAGCGAUGGAAAUGUUUU--AUUUAACAUUUGCCCAGCU-----UCCAUUGCCG----- .....((((((....-..((((((..(((.(((.....)))...)))..)))----)))(((...(((((((((..--....))))))).))..)))-----..))))))..----- ( -25.00, z-score = -1.42, R) >droSim1.chrX 1788783 104 + 17042790 UGAUAGCAAUGCAAC-AGGUGAUUAGUGAUUAGUGUUGCUAUUUUCGUCAGU----UACAGCGAUGGAAAUGUUUU--AUUUAGCAUUUGCCCAGCUGUUU-UCCAUUGCCG----- .....((((((.(((-.(..((.(((..((....))..)))...))..).))----)(((((...(((((((((..--....))))))).))..)))))..-..))))))..----- ( -29.00, z-score = -2.21, R) >consensus UGAUAGCGAUGCAAC_A_GUGAUUAGUGAUUAGUGUUGCUAUUUUCGUCAGU____UACAGCGAUGGAAAUGUUUU__AUUUAGCAUUUGCCCAGCUGUUU_UCCAUUGCCG_____ .(((((((((((....................)))))))))))..((.((((.....(((((...(((((((((........))))))).))..)))))......)))).))..... (-22.17 = -22.65 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:44 2011