| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,538,157 – 2,538,258 |
| Length | 101 |
| Max. P | 0.500000 |
| Location | 2,538,157 – 2,538,258 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 87.29 |
| Shannon entropy | 0.17106 |
| G+C content | 0.54109 |
| Mean single sequence MFE | -15.80 |
| Consensus MFE | -14.33 |
| Energy contribution | -14.33 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 2538157 101 + 22422827 AUUUCCACACCGCUUU-CCGACCGCAGCUCGGGAUGCAUUUCCAGCUGUCUCGCGUCACUCCGCACCACCCACCACCCACCAGCCAUCCGCUUAAUUAAUUU ...........(((..-..((..((((((.((((.....)))))))))).))(((......))).................))).................. ( -17.80, z-score = -1.66, R) >droSec1.super_10 2303955 95 + 3036183 AUUUACACGCCGCUUUUCCGACUUCUGCUUGGGAUGCAUUUCCAGCUGUCUCGCGUCACUCCGCACCACCCACCACC-------CAACCGCUCAAUUAAUUU ...........((......(((....(((.((((.....))))))).)))..(((......))).............-------.....))........... ( -14.80, z-score = -0.77, R) >droSim1.chrX_random 1313891 92 + 5698898 AUUUCCACGCCGCUUUUCCGACUUCUGCUUGGGAUGCAUUUCCAGCUGUCUCGCGUCACUCCGCACCACCCACC----------CAACCGCUCAAUUAAUUU ...........((......(((....(((.((((.....))))))).)))..(((......)))..........----------.....))........... ( -14.80, z-score = -0.67, R) >consensus AUUUCCACGCCGCUUUUCCGACUUCUGCUUGGGAUGCAUUUCCAGCUGUCUCGCGUCACUCCGCACCACCCACCACC_______CAACCGCUCAAUUAAUUU ...........((......(((....(((.((((.....))))))).)))..(((......))).........................))........... (-14.33 = -14.33 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:40 2011