| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,537,090 – 2,537,206 |
| Length | 116 |
| Max. P | 0.605151 |
| Location | 2,537,090 – 2,537,206 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 73.96 |
| Shannon entropy | 0.49378 |
| G+C content | 0.42827 |
| Mean single sequence MFE | -32.45 |
| Consensus MFE | -13.05 |
| Energy contribution | -13.17 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.605151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2537090 116 - 22422827 UUUGCUUCUUUCUCUUCGUUUUUCUUUUGUUUUUCGCGUUUUAUUCAGCGUUUUUUCCCUGCGUUAUUUAGUGCAAACUCGGGUAUCAAAGGCGAAGCGAAGAGCGAAGAGCAGAG ((((((.(((((((((((((((.((((((...((((.((((((((.(((((.........)))))....)))).)))).))))...)))))).))))))))))).)))))))))). ( -38.80, z-score = -3.70, R) >droEre2.scaffold_4644 2483178 103 - 2521924 UCUGCUUCUUUCUCCGCGUUUUACGUGUGUUUU----------UUCAGCGC-UUUUUCCUGCUUUAUUUAGUGCAAACUCGGGUAUCAAAUGCGAAGCGAUGAGC--AGAGCAGAG (((((((.((.((.((((((((((.((.((((.----------....((((-(................))))))))).)).)))..))))))).)).)).))))--)))...... ( -28.69, z-score = -0.95, R) >droYak2.chrX 15955212 102 + 21770863 UCUGCUUCUUUCUCCGCGUUUUUCGUGU-UUUC----------UUCAGCGC-UUUUUCCUGCUUUAUUUAGUGCAAACUCGGGUAUCAAAUGCGAAGCGGAGAGC--AGAGCAGAG (((((((..((((((((....(((((((-((..----------....((((-(................)))))..((....))...))))))))))))))))).--.))))))). ( -34.59, z-score = -2.62, R) >droSec1.super_10 2302879 105 - 3036183 UCUGCUUCUUUCUCUGCGUUUUUCGUGUUUU-----------AUUCAGCGCUUUUUUCCUGCGUUAUUUAGUGCAAACUCGGGUAUCAAAGGCGAAGCGAAGAGUGAAGAGCAGAG ((((((.((((((((.(((..(((((.((((-----------(((((((((.........)))))....(((....))).)))))..))).)))))))).)))).)))))))))). ( -33.20, z-score = -1.83, R) >droSim1.chrX_random 1350345 116 - 5698898 UCUGCUUCUUUCUCUGCGUUUUUCGUUUGUUUUUCGAGUUUUAUUCAGCGCUUUUUUCCUGCGUUAUUUAGUGCAAACUCGGGUAUCAAAGGCGAAGCGAAGAGCGAAGAGCAGAG ((((((.((((((((.((((((.(.((((...(((((((((((((.(((((.........)))))....)))).)))))))))...)))).).)))))).)))).)))))))))). ( -41.90, z-score = -3.47, R) >droWil1.scaffold_181130 9563488 116 + 16660200 UUUGAUUUUUGUAUUGCAUUUUGUUUUUGUUAUUUUUUUCCUUUUAAACGCUUGCUGACGGCUAUAUGUUGGGCACACCCAUAAAUCUUCCGCCAACUGACUGAAGAGAGGCUGAG ...............(((...(((((...................)))))..)))...(((((......((((....))))....(((((.(.(....).).)))))..))))).. ( -17.51, z-score = 1.29, R) >consensus UCUGCUUCUUUCUCUGCGUUUUUCGUGUGUUUU_________AUUCAGCGCUUUUUUCCUGCGUUAUUUAGUGCAAACUCGGGUAUCAAAGGCGAAGCGAAGAGCGAAGAGCAGAG (((((((.((.(((..(((((..(.........................((.........))..((((((((....))).)))))......)..)))))..))).)).))))))). (-13.05 = -13.17 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:39 2011