| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,530,971 – 2,531,085 |
| Length | 114 |
| Max. P | 0.668592 |
| Location | 2,530,971 – 2,531,085 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 89.73 |
| Shannon entropy | 0.17534 |
| G+C content | 0.53104 |
| Mean single sequence MFE | -42.46 |
| Consensus MFE | -35.20 |
| Energy contribution | -34.80 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2530971 114 + 22422827 CAGGGCUGACAUCAUUUUGCAGUCGGUAAUCGAUUGCAGUGGGAAUUU--GACAUUU---GACAGUGUUGUAAAGCGGCGAGGCAGCAGCACUAGUUGCGUCGCGUCUCAGUCGCUGCG (((((((((..((...(((((((((.....)))))))))...))....--.......---(((..((((....))))((((.(((((.......))))).))))))))))))).))).. ( -42.00, z-score = -1.88, R) >droSim1.chrX 1780418 114 + 17042790 CAGGGCUGACAUCAUUUUGCAGUCGUUAAUCGAUUGCAGUGGGAAUUU--GACAUUU---GACAGUGUUGUAAAGCGGCGGGGCAGCAGCACUAGUUGCGUCGCGUCUCAGUCGCUGCG (((((((((..((...(((((((((.....)))))))))...))....--(((((..---....))))).......((((.(((.(((((....)))))))).)))))))))).))).. ( -42.10, z-score = -2.10, R) >droSec1.super_10 2296863 114 + 3036183 CAGGGCUGACAUCAUUUUGCAGUCGGUAAUCGAUUGCAGUGGGAAUUU--GACAUUU---GACAGUGUUGUAAAGCGGCAGGGCAGCAGCACUAGUUGCGUCGCGUCUCAGUCGCUGCG (((((((((..((...(((((((((.....)))))))))...))....--(((...(---(((.((.((((......)))).)).(((((....))))))))).))))))))).))).. ( -40.30, z-score = -1.57, R) >droYak2.chrX 15949083 117 - 21770863 CAGGGCUGACAUAAUUUUGCAGUCGGUUAUCGAUUGCAGUGGGAUUGU--GGCUUUGACAGGCAGUGUUGUAAAGCGGCGUGGCAGCAGCACUAGUUGCGUAGCGUCUCAGUCGCUGCG (((((((((((((((((((((((((.....)))))))))...))))))--)((((((.(((......)))))))))(((((.((.(((((....))))))).))))))))))).))).. ( -46.40, z-score = -2.27, R) >droEre2.scaffold_4644 2476853 119 + 2521924 AAGGGCUGACAUCAUUUUGCAGUCGGCUAUCGAUUGCAGUGGCAGUUUUUGGCUUUGACAAGCAGUGUUGCAAAGCGGUGGGGGAGCAGCACUAGUUGCGUAGCGUCUCAGUCGCUGCG ...(((((((...........))))))).......((((((((........((((((.(((......)))))))))..((((((.(((((....)))))....).))))))))))))). ( -41.50, z-score = -0.45, R) >consensus CAGGGCUGACAUCAUUUUGCAGUCGGUAAUCGAUUGCAGUGGGAAUUU__GACAUUU___GACAGUGUUGUAAAGCGGCGGGGCAGCAGCACUAGUUGCGUCGCGUCUCAGUCGCUGCG (((((((((.......(((((((((.....)))))))))...........(((.......(((((((((((...((......)).)))))))).))).......))))))))).))).. (-35.20 = -34.80 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:39 2011