| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,529,991 – 2,530,088 |
| Length | 97 |
| Max. P | 0.939908 |
| Location | 2,529,991 – 2,530,088 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 72.54 |
| Shannon entropy | 0.45241 |
| G+C content | 0.38855 |
| Mean single sequence MFE | -26.97 |
| Consensus MFE | -7.93 |
| Energy contribution | -8.05 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.26 |
| Mean z-score | -3.31 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.939908 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2529991 97 - 22422827 AUUGCAAAGGCAUUUCCCUACA-----AGGAAGCCUCAAAAACAUUGC---ACUACAAACUGUAA----AGAAAUAUUCCUCUAUAUUGAG--GAU--AAAAUGUCGCAGUUU- ..(((((((((..((((.....-----.))))))))........))))---)....((((((..(----........(((((......)))--)).--......)..))))))- ( -23.96, z-score = -3.32, R) >droSim1.chrX 1779452 97 - 17042790 AUUGCGAAGGCAUUUCCCUACA-----GGGAAGCCUCAAAAACACUGC---ACUACAAACUGGAA----AGAAAUAUCACUCUCUAUUGAG--GAU--AAAAUGUCGCAGUUG- .....((.(((..(((((....-----))))))))))......(((((---........((....----))...((((.(((......)))--)))--).......)))))..- ( -26.20, z-score = -3.07, R) >droSec1.super_10 2295900 97 - 3036183 AUUGCGAAGGCAUUUCCCUACA-----GGGAAGCCUCAAAAACACUGC---ACUACAAACUGCAA----AGAAAUAUUACUCUCUAUUGAG--GAU--AAAAUGUCGCAGUUG- (((((((((((..(((((....-----))))))))).........(((---(........)))).----.......(((..(((....)))--..)--))....)))))))..- ( -26.00, z-score = -3.25, R) >droYak2.chrX 15948097 108 + 21770863 AUUGCGAAGGCAUUUUUUCCUA---CAGCGAAACCUCAAAAACACUGC---GCCACAAAACGGGCUAAUAAUAAUAGUGCUCACUAUUAAGUAGAUCAGGAAUAAAAUGAAUUG ..(((....)))(((.(((((.---....((....)).......((((---(((........)))......(((((((....))))))).))))...))))).)))........ ( -22.70, z-score = -2.00, R) >droEre2.scaffold_4644 2475849 108 - 2521924 AUUGCGAAAGCAUUUUCCCCCAAGAGGGGGAAACCUCAAAAACACUGCGCAACCAGAAACUGAAA-AAUAAAAACAGUCCUCACUAUUGAG--GAU---GGUUAUGACAGUUUA ..(((....))).((((((((....))))))))..........((((((.(((((....(((...-........)))((((((....))))--)))---)))).)).))))... ( -36.00, z-score = -4.91, R) >consensus AUUGCGAAGGCAUUUCCCUACA_____GGGAAGCCUCAAAAACACUGC___ACUACAAACUGGAA____AGAAAUAUUACUCUCUAUUGAG__GAU__AAAAUGUCGCAGUUU_ ..(((....)))((((((.........))))))........................(((((...........((....(((......)))...))...........))))).. ( -7.93 = -8.05 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:38 2011