| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,515,968 – 2,516,064 |
| Length | 96 |
| Max. P | 0.676537 |
| Location | 2,515,968 – 2,516,064 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 61.89 |
| Shannon entropy | 0.51809 |
| G+C content | 0.37926 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -11.42 |
| Energy contribution | -7.89 |
| Covariance contribution | -3.53 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.676537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2515968 96 + 22422827 AGUAUAGGUAUUAAUUAUUGAUCCAGUUAGAGAU-UGCCUUGUAGAUUGCUGAACUUUGCAUUUUCGAUGCAGUUGCUCAUUCGUUGUUAUCUAUGC .(((((((((.((((...(((((......))(((-(((.(((.(((.(((........))).)))))).))))))..)))...)))).))))))))) ( -22.10, z-score = -1.22, R) >droSec1.super_10 2282024 92 + 3036183 AGUAUAGGUAUUA----UUGCCCCAGUUAGAGAU-UGCCUUGUAGAUUGCUGAGCUGUGCAUUUCCGAUGCAGUUGCUCAUUCGUUGUUACCUAUGC .(((((((((...----..((..(((((.(((..-...)))...))))).(((((..((((((...))))))...)))))...))...))))))))) ( -24.80, z-score = -1.91, R) >droAna3.scaffold_12929 2517968 86 + 3277472 UGUAAAGAAAGCA-----GGACUUCUUUAAGGACAUGCCUUCUA---UAAGGAUUUGAAUGUUUCCCA---AGGCAUUCCGACAUUGUUUUAUAUUU ..(((((((....-----....))))))).(((.(((((((...---...(((..........))).)---)))))))))................. ( -16.40, z-score = -0.44, R) >consensus AGUAUAGGUAUUA____UUGACCCAGUUAGAGAU_UGCCUUGUAGAUUGCUGAACUGUGCAUUUCCGAUGCAGUUGCUCAUUCGUUGUUAUCUAUGC .(((((((((.((.....(((..((((..(((......))).......))))......(((.............)))))).....)).))))))))) (-11.42 = -7.89 + -3.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:36 2011