| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,485,831 – 2,485,941 |
| Length | 110 |
| Max. P | 0.956989 |
| Location | 2,485,831 – 2,485,941 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 62.25 |
| Shannon entropy | 0.63753 |
| G+C content | 0.54437 |
| Mean single sequence MFE | -33.00 |
| Consensus MFE | -13.14 |
| Energy contribution | -12.58 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.956989 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2485831 110 - 22422827 AGCAGCAAUCACUGAAUGGGCCACUACG--CUCUUGGCCACGAUCCCAGCUAACUGGCAGGG-AACUGCGCCGAUCUUGGCCAACUCAUCGUUGGUGCAUCGCACGUCACUUG .(((.((((...(((..((((......)--)))(((((((.((((.(((....)))((((..-..))))...)))).))))))).)))..)))).)))............... ( -38.50, z-score = -1.76, R) >droEre2.scaffold_4644 2438353 100 - 2521924 ------------ACCAGCACUCACUGGGAUCACUCGGCUUCCUCGGCUUUUGGCCAA-AAGCUAUAUGCGCUGAUCUGAGCGAACUCAUCGUUGGUGCAUUGGACGCCGUUUC ------------.((((......)))).......((((.(((..(((((((....))-)))))..((((((..((.((((....))))..))..)))))).))).)))).... ( -36.30, z-score = -2.75, R) >droYak2.chrX 15909423 86 + 21770863 -------------------------UCCAGUACGGAG-UAACUCCGCUCUUGGCCAG-AAGCUAAGUGCGCUGAUUUGCGCCAACUCAUUGUUGGUGCAUCAAUCGCCAGUUU -------------------------..((((..((((-...))))((.((((((...-..)))))).))))))...(((((((((.....))))))))).............. ( -33.30, z-score = -3.61, R) >droSec1.super_10 2259049 98 - 3036183 ------------UGCAGCAAUCACAGCG--CUCUUGGCCACGAU-CCAGCUAACUGGCAAGGAAACUGCACUGAUCUGGGCCAACUCAUCGUUGGUGCAUCGAACGUCACUUG ------------....(((....(((((--...((((((..(((-((((....)))(((.(....))))...))))..)))))).....))))).)))............... ( -29.60, z-score = -0.98, R) >droSim1.chrX 1762348 97 - 17042790 ------------UGCAGCAAUCACUACG--CUCUUGGCCACGAU-CCAGCCAACUGGCAAGG-AACUGCCCUGAUCUGGGCCAACUCAUCGUUGGUGCAUCGAACGUCACUUG ------------((((.((((.......--...((((((..(((-(..(((....))).(((-......)))))))..))))))......)))).)))).............. ( -27.29, z-score = -0.49, R) >consensus ____________UGCAGCAAUCACUACG__CUCUUGGCCACGAU_CCAGCUAACUGGCAAGG_AACUGCGCUGAUCUGGGCCAACUCAUCGUUGGUGCAUCGAACGUCACUUG ..................................((((.......((.(((....)))..))....(((((((((.((((....))))..)))))))))......)))).... (-13.14 = -12.58 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:30 2011