| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,463,160 – 2,463,279 |
| Length | 119 |
| Max. P | 0.520542 |
| Location | 2,463,160 – 2,463,279 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 124 |
| Reading direction | forward |
| Mean pairwise identity | 58.79 |
| Shannon entropy | 0.77077 |
| G+C content | 0.54768 |
| Mean single sequence MFE | -26.18 |
| Consensus MFE | -9.05 |
| Energy contribution | -10.30 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.520542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2463160 119 + 22422827 CCCCGCCCUCGUCCUGGACUACCGAACUAUCGAACUACGGAA-CUUGCAUCUACCAUCUUCGCC----AGAAUAGGCAUUUUUAAUAUGGCCACUUGUCUGGCCUCUCGUUCUUCCUGGGAAAU ...........(((((((....(((....)))......((((-(.................(((----......)))...........(((((......)))))....)))))))).))))... ( -25.40, z-score = -0.13, R) >droSim1.chrX_random 1280702 99 + 5698898 CCCCGCCCUCGUCCCAAGCUACCGAACUACC-----------------AUCUACCAUCUUCGCC----AGAAUAGGC--UUUUAAUGUGGCCACUUGUCUGGCCU--CGUUCUUCCUGGGAAAU ...........(((((.(.....((((....-----------------.............(((----......)))--.......(.(((((......))))).--)))))..).)))))... ( -22.40, z-score = -0.89, R) >droSec1.super_188 24756 99 + 32237 CCCCGGCCUCGUCCCGGACUACCGAACUACC-----------------AUCUACCAUCUUCGCC----AGAAUAGGC--UUUUAAUGUGGCCACUUGUGUGGCCU--CGUUCUUCCUGGGAAGU .(((((.........((....))((((....-----------------.............(((----......)))--.......(.((((((....)))))).--)))))...))))).... ( -29.30, z-score = -1.25, R) >droYak2.chrX 15890351 121 - 21770863 CCCCGCACCCGCUCCCGCUCCUGCCCCCCUCCUUUCCCCGGA-CUAUCGACCCCCUUUGUGGCCCCCCAGAAUGGGUCCUUUUAAUGCGGCCACUUGUCUGGCCU--CAAUCUUCCUGGGAAAU ....(((...((....))...)))........((((((.(((-.....(((((..((((.((...))))))..))))).......((.(((((......))))).--))....))).)))))). ( -36.10, z-score = -2.83, R) >droEre2.scaffold_4644 2413605 116 + 2521924 ACCCGCCCCCGC-CUCGCACCUGCCACCGCCCACAUCCCGAU-ACACCGGCCCUUUUUUCUGCCCC--AGAAUAGG--CUUUUAAUGUGGCCACUUGUCUGGCCU--CAAUCUUCCUGGGAAAU .(((......((-((.((....)).............(((..-....))).......(((((...)--)))).)))--)......((.(((((......))))).--))........))).... ( -25.60, z-score = -0.13, R) >droAna3.scaffold_12929 2383538 107 + 3277472 ACCCGUCCAGGUCCAUCCAGGGCCACCCACCCAACUAUAGAAACCACCAACCAUCGACAUCGCCC-----GCUGAGAGUUCUUAAAGUUUCCUUUUUAUU--------AUUUUUUUUGGG---- ....(((..(((((.....)))))...............((............)))))....(((-----(..((((((...(((((......)))))..--------))))))..))))---- ( -18.30, z-score = -0.47, R) >consensus CCCCGCCCUCGUCCCCGCCUACCCAACCACCCA__U_C_GAA_C_A_CAUCCACCAUCUUCGCC____AGAAUAGGC__UUUUAAUGUGGCCACUUGUCUGGCCU__CAUUCUUCCUGGGAAAU .(((.........................................................(((..........)))...........(((((......))))).............))).... ( -9.05 = -10.30 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:26 2011