| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,440,347 – 2,440,433 |
| Length | 86 |
| Max. P | 0.664865 |
| Location | 2,440,347 – 2,440,433 |
|---|---|
| Length | 86 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 79.31 |
| Shannon entropy | 0.33428 |
| G+C content | 0.57546 |
| Mean single sequence MFE | -31.23 |
| Consensus MFE | -21.04 |
| Energy contribution | -20.98 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.664865 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2440347 86 - 22422827 UGGCUAAAU--CGGCUGAAGGUCACGGAUUGUGGCCGGU-----------CCUAUGGCCAGUUGACAAACCGACUUAACCGCCAAAGCCGACGAGCCCG .((((...(--(((((...((...(((....((((((..-----------....))))))((((......))))....)))))..))))))..)))).. ( -33.40, z-score = -2.67, R) >droSim1.chrX 1744963 93 - 17042790 ----CUAAUG-GGGCUGAAGGUCACGGAUUGUGGCCGCUGUAGCCCAUGACCUAUGGCUAGUUGAC-AACCAACUGAACCGCCAAAGCCGCCGAGCCUU ----....((-(((((..((((((.((..((..(...)..))..)).)))))).((((((((((..-...))))))....)))).)))).)))...... ( -31.80, z-score = -1.38, R) >droSec1.super_10 2214254 93 - 3036183 ---CUAAAUGCGCGUUGAAGGUCACGGAUUGUGGCCGCUGUAGCCCAUGACCUAUGGCUAGUUGAC-AACCGACUUAACCGCCAAAGCCGCCGAGCC-- ---......(((.(((..((((((.((..((..(...)..))..)).)))))).((((.(((((..-...))))).....)))).))))))......-- ( -26.20, z-score = -0.40, R) >droYak2.chrX 15866318 93 + 21770863 -----CGAUGUGGGCUGAAGGUCACGGAUUGUGACCGGUCUAGCCCAUGACCCAUGGCCAGUUCAC-AACCGACUUAACCGCCAAAGCCGCCGAGUCUU -----...(((((((((..((((((.....))))))((((........))))......))))))))-)...(((((..(.((....)).)..))))).. ( -33.50, z-score = -2.06, R) >consensus ____UAAAUG_GGGCUGAAGGUCACGGAUUGUGGCCGCUGUAGCCCAUGACCUAUGGCCAGUUGAC_AACCGACUUAACCGCCAAAGCCGCCGAGCCUU ............((((...((((((.....))))))..................((((.(((((......))))).....)))).)))).......... (-21.04 = -20.98 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:23 2011