| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,428,769 – 2,428,877 |
| Length | 108 |
| Max. P | 0.932812 |
| Location | 2,428,769 – 2,428,877 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 75.61 |
| Shannon entropy | 0.40604 |
| G+C content | 0.43734 |
| Mean single sequence MFE | -23.14 |
| Consensus MFE | -18.40 |
| Energy contribution | -18.72 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.932812 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2428769 108 + 22422827 CUCAAAUGUAGGGGAAACCUAACUCGGUUGCGAGAAACGAGACUUGGAAUUAGCUUCCAAGAAUCCUGGCGCACAACUAACUUGAGAAGAAUACGUACUCGUAUAUGG (((((..((.(((....))).))..(((((.(.(..(.((..(((((((.....)))))))..)).)..).).)))))...)))))....(((((....))))).... ( -30.10, z-score = -2.62, R) >droEre2.scaffold_4644 2378981 102 + 2521924 CUCAAAUGUUGGGGAA-CCUAACUCGGUUUCGGGAAACGAGAUAUGGAAUUAGCUUCCAAGAAUCCUGACGCACAACUAACUUGAAAUCGCAAAAUAGAAAAG----- .((((..(((((((((-.((((.((.((((((.....))))))...)).)))).)))).((....)).........)))))))))..................----- ( -19.20, z-score = -0.34, R) >droYak2.chrX 15854529 102 - 21770863 CUCAAAUGUAGGGGAA-CCUAACUCGGUUUCGGGAAACGAGACAUGGAAUAAGCUUCCAGGAAUCCUGGCGCAUAACUAACUCGAAGUCGCAAAAUAGAAAAG----- .((.....((((....-))))..(((((((((.....)))))).........((..(((((...))))).))..........)))............))....----- ( -23.20, z-score = -0.74, R) >droSec1.super_10 2203025 83 + 3036183 CUCAAAUGUUGGGGAA-CCUAACUCGGUUGCGAGAAACGAGACUUGGAAUUAGCUUCCAAGAAUCCUGGCGCAUAAU-------AGAAAAA----------------- .......((..(((..-.....((((....))))........(((((((.....)))))))..)))..)).......-------.......----------------- ( -20.80, z-score = -1.52, R) >droSim1.chrX 1733603 83 + 17042790 CUCAAAUGCUGGGGAA-CCUAACUCGGUUGCGAGAAACGAGACUUGGAAUUAGCUUCCAAGAAUCCUGGCGCAUAAU-------AGAAAAA----------------- .......((..(((..-.....((((....))))........(((((((.....)))))))..)))..)).......-------.......----------------- ( -22.40, z-score = -2.04, R) >consensus CUCAAAUGUUGGGGAA_CCUAACUCGGUUGCGAGAAACGAGACUUGGAAUUAGCUUCCAAGAAUCCUGGCGCAUAACUAACU_GAGAAAAA_A__UA___________ .......(((((((........((((...........)))).(((((((.....)))))))..)))))))...................................... (-18.40 = -18.72 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:20 2011