| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,425,021 – 2,425,121 |
| Length | 100 |
| Max. P | 0.847090 |
| Location | 2,425,021 – 2,425,121 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.79 |
| Shannon entropy | 0.33612 |
| G+C content | 0.40366 |
| Mean single sequence MFE | -26.42 |
| Consensus MFE | -16.42 |
| Energy contribution | -16.14 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.847090 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2425021 100 + 22422827 GUGUUCUUCAUCUAUUUUCAGAUGA--UGAAAUGGUGACCCCGCAC---GGAAAAAGUUCCAAAUAGUUUGUCA---------GAUCGUUUGUUGGGUCGCCUUUUGAUUGCCG------ ...(((.((((((......))))))--.)))..((((((((.((..---((((....))))(((..(((.....---------)))..))))).))))))))............------ ( -29.20, z-score = -2.54, R) >droSim1.chrX 1729938 100 + 17042790 AUGUUCUUCAUCUAUUUUCAGAUGA--UGAAAUGGUGACCCCGCAU---GGAAAAAGUUCCAAAUAGUUUGUUU---------GAUCGUUUGUUGGGUCGCCUUUUGAUUGUCG------ ....................((..(--(.(((.((((((((.((((---((((....)))))((..(((.....---------)))..))))).)))))))).))).))..)).------ ( -29.40, z-score = -3.27, R) >droSec1.super_10 2199313 100 + 3036183 AUGUUCUUCAUCUAUUUUCAGAUGA--UGAAAUGGUGACCCCGCAU---GGAAAAAGUUCCAAAUAGUUUGUCA---------GAUCGUUUGUUGGGUCGCCUUUUGAUUGUCG------ ....................((..(--(.(((.((((((((.((((---((((....)))))((..(((.....---------)))..))))).)))))))).))).))..)).------ ( -29.20, z-score = -2.89, R) >droYak2.chrX 15850565 118 - 21770863 GUGUUCUUCAUCUAUUUCCAGCUGGCUUCCUUUGGUGACUCCGCACC--GAUAAAAUGUCCAAACAUUUUGUCAUAUUAAUUGGAUCGUUUGCAGAGUUGCCUUUUCAUUUUGAUUGCCA .......................(((.......((..((((.(((..--((((((((((....))))))))))..(((.....)))....))).))))..))...((.....))..))). ( -26.40, z-score = -1.59, R) >droEre2.scaffold_4644 2374999 105 + 2521924 GUGUUCUUCAUCUAUUUUCAGCUGGCUUCCUUUGGUGACCCCGCACCAAAAAAAAAGAUCCAAAUAAUUUGUCA---------GAUCGUUUGUUGUGUUGCCUUUUGAUUGCCA------ .................((((..(((....(((((((......)))))))......(((((((.....)))...---------))))............)))..))))......------ ( -17.90, z-score = -0.05, R) >consensus GUGUUCUUCAUCUAUUUUCAGAUGA__UGAAAUGGUGACCCCGCAC___GGAAAAAGUUCCAAAUAGUUUGUCA_________GAUCGUUUGUUGGGUCGCCUUUUGAUUGUCG______ .......((((((......))))))........((((((((.(((.............................................))).)))))))).................. (-16.42 = -16.14 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:19 2011