Locus 12817

Sequence ID dm3.chrX
Location 2,417,195 – 2,417,315
Length 120
Max. P 0.918391
window17617

overview

Window 7

Location 2,417,195 – 2,417,315
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 88.86
Shannon entropy 0.15305
G+C content 0.36870
Mean single sequence MFE -29.43
Consensus MFE -25.76
Energy contribution -26.88
Covariance contribution 1.11
Combinations/Pair 1.03
Mean z-score -1.99
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.26
SVM RNA-class probability 0.918391
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 2417195 120 - 22422827
GGUGAAGCCCACUUUAGGUGCAACAAGAAUUAUCUGGCAGAUACAUUGUACGUUUCGAUAUAUAUAUUUUGAUUGUUUCGGGCUUCAAACGUACUGCUUAGCAUAAUUCUUCUAUCCGUU
((.(((((((......)).)).....((((((((((((((.(((.(((...(((.(((.(((...........))).))))))..)))..))))))).))).))))))))))...))... ( -24.90, z-score =  -0.51, R)
>droSec1.super_10 2191907 119 - 3036183
GGUGAAGCCCACUUUGGGUGCAACAAGAAUUAUCUGGCAGAUACAUUGCAUAUUUCGAUAUUUAU-UUCGAUUUUUUUCGGGGUAUAACCGUACUGCUGAGAAUAAUUCUUCUAUUCGUU
.((...((((.....))))...))((((((((((((((((.(((((((.......))))...(((-..(((......)))..))).....)))))))).)).)))))))))......... ( -31.40, z-score =  -2.61, R)
>droSim1.chrX 1722329 119 - 17042790
GGUGAAGCCCACUUUGGGUGCAACAAGAAUUAUCUGGCAGAUACAUUGCAUAUUUCGAUAUUUAU-UUCGAUUUUUUUCGGGGUAUAACCGUACUGCUGAGCAUAAUUCUUAUAUUAGUU
.((...((((.....))))...))((((((((((((((((.(((((((.......))))...(((-..(((......)))..))).....)))))))).)).)))))))))......... ( -32.00, z-score =  -2.86, R)
>consensus
GGUGAAGCCCACUUUGGGUGCAACAAGAAUUAUCUGGCAGAUACAUUGCAUAUUUCGAUAUUUAU_UUCGAUUUUUUUCGGGGUAUAACCGUACUGCUGAGCAUAAUUCUUCUAUUCGUU
.((...((((.....))))...))((((((((((((((((.(((.....(((((((((...................)))))))))....)))))))).)).)))))))))......... (-25.76 = -26.88 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:19 2011