| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,392,188 – 2,392,289 |
| Length | 101 |
| Max. P | 0.923636 |
| Location | 2,392,188 – 2,392,289 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 67.72 |
| Shannon entropy | 0.47671 |
| G+C content | 0.48768 |
| Mean single sequence MFE | -21.52 |
| Consensus MFE | -13.49 |
| Energy contribution | -13.12 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923636 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2392188 101 - 22422827 UAUUUACUAUAUAUUAAACACUGAUCCCCACACAUCCCCACAUCCCCACACACACACGCAGCUGUCAGAGGUGGGAUCUGCGAUAUAG-GGCCCACCUUAGA------- ......(((...........(((((......................................)))))(((((((..(((.....)))-..)))))))))).------- ( -17.16, z-score = 0.28, R) >droSim1.chrX 1708594 93 - 17042790 UAUGUACUAUAUAUUAAACACUGAUCC--------CCCCACAUCCCCACACACACACGCCGCUGUCAGAGGUGGGAUCUGCGAUCUAG-GACCCACCUCUGG------- ...........................--------..............................((((((((((.(((........)-)))))))))))).------- ( -22.40, z-score = -1.19, R) >droYak2.chrX 15817136 94 + 21770863 ---UUUGUAGAUAUAAAACCCU-AUC---------UCCAACAUCCC--CACACAUACUCAGCUGUCAGAGAUGGGAUCGCCGCGGCGAUCUACUAUUUCUGACCUGUGA ---.(((.(((((........)-)))---------).)))......--........(.(((..(((((((((((((((((....))))))..)))))))))))))).). ( -30.50, z-score = -4.49, R) >droEre2.scaffold_4644 2341388 85 - 2521924 ---UUUGUAGAUAU-AAACACU-ACC---------UCCCACAUCCC--CACACAUACUCAGCUGUCACAGGUGGGAUCG-AGAAACAACGACCCAUCUCUGA------- ---...((((....-.....))-)).---------...........--................(((.(((((((.(((-........)))))))))).)))------- ( -16.00, z-score = -0.75, R) >consensus ___UUACUAGAUAUUAAACACU_AUC_________CCCCACAUCCC__CACACACACGCAGCUGUCAGAGGUGGGAUCGGCGAUACAA_GACCCACCUCUGA_______ ................................................................(((((((((((................)))))))))))....... (-13.49 = -13.12 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:16 2011