| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,366,382 – 2,366,433 |
| Length | 51 |
| Max. P | 0.989780 |
| Location | 2,366,382 – 2,366,433 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 68.01 |
| Shannon entropy | 0.55464 |
| G+C content | 0.28556 |
| Mean single sequence MFE | -11.94 |
| Consensus MFE | -7.02 |
| Energy contribution | -6.86 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.989780 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 2366382 51 + 22422827 AUUUUGAUUUU-AUUUUUAAGAGUA----------AAGAGCCCUUUAU-GGGCUUUAAACGAU .((((((....-....))))))((.----------.(((((((.....-)))))))..))... ( -12.90, z-score = -3.30, R) >droSim1.chrX_random 1242175 57 + 5698898 AUUUUCAUAUU-AUUUUUAAAAGUAGACGG----UAAGAGCCUUUUAU-GGGCUUUAAACAAU .......(((.-.(((........)))..)----))(((((((.....-)))))))....... ( -9.20, z-score = -1.42, R) >droSec1.super_10 2138987 58 + 3036183 AUUUUCAUUUUUAUUUUUAAAAGUAGAGGG----UAAGAGCCUUUUAU-GGGCUUUAAACAAU (((((((((((((....))))))).)))))----).(((((((.....-)))))))....... ( -13.90, z-score = -2.93, R) >droEre2.scaffold_4644 2315992 58 + 2521924 AAUUCCAUUUU-AUUCUUAAAAAUAGGCGG----UAAAAGCCUUUUUUUGGGCUUUAAAUAAU ........(((-(..((((((((.((((..----.....)))).))))))))...)))).... ( -11.90, z-score = -1.52, R) >droAna3.scaffold_12929 2276985 59 + 3277472 ---UUCUCUUUGAUUUCUGCAGAUAUGGGAGAUAUAGGAGAAGCUUAU-AGCUUUCAACCGAU ---(((((((..((((((.((....))))))))..)))))))((....-.))........... ( -11.80, z-score = -0.25, R) >consensus AUUUUCAUUUU_AUUUUUAAAAGUAGACGG____UAAGAGCCUUUUAU_GGGCUUUAAACAAU ....................................(((((((......)))))))....... ( -7.02 = -6.86 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:14 2011