| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,358,240 – 2,358,334 |
| Length | 94 |
| Max. P | 0.834700 |
| Location | 2,358,240 – 2,358,334 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 79.70 |
| Shannon entropy | 0.36266 |
| G+C content | 0.48195 |
| Mean single sequence MFE | -27.91 |
| Consensus MFE | -20.54 |
| Energy contribution | -20.82 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.834700 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2358240 94 - 22422827 AAGUUGAAGGUGUGUCUGGCAUACCCUUUAGCCGAUCAAGUUAACAGGGUACUACCUACGUUUGCUGCUGCGUGAGUAGAAAGCAAGCUUUUUG ..((((((((((((.....)))).)))))))).............(((......)))..(((((((.((((....))))..)))))))...... ( -30.90, z-score = -2.14, R) >droEre2.scaffold_4644 2307414 90 - 2521924 AAAUGGAAGGUAUGUUUGGCAUACCCUUCAGCCGAUCAAACUAACAGGGUACU----ACAUUUGCUGCUGCGUGAGUAGAAAGCAAGCUUUUUG ...((((.((((((.....)))))).))))(((..............)))...----...((((((.((((....))))..))))))....... ( -24.14, z-score = -0.94, R) >droYak2.chrX 15782737 79 + 21770863 -----------AAGUUCGGCAUACCCUUCGGCCUAUCAAACGCACAGGGUACU----ACGUUUGCUGCUGCGUGAGUAGAAAGCAAGCUGUGUG -----------.......(((((((((...((.........))..)))))...----..(((((((.((((....))))..))))))).)))). ( -25.50, z-score = -1.01, R) >droSec1.super_10 2130871 94 - 3036183 GUUCGGGCGUCAAUUCGGGCAUACCCUUCGGCCGAUCAAGUUAACAGGGUACUACCUACGUUUGCUGCUGCGUGAGUAGAAAGCAAGCAUUUUG (.((((.((.......(((....)))..)).)))).)........(((......)))..(((((((.((((....))))..)))))))...... ( -30.40, z-score = -1.67, R) >droSim1.chrX 1678595 94 - 17042790 GUUCGGGCGUCAAUUCGGGCAUACCCUUCAACCGAUCAAGUUAACAGGGUACUACCUACGUUUGCUGCUGCGUGAGUAGAAAGCAAGCAUUUUG (((((((......))))))).((((((..(((.......)))...))))))........(((((((.((((....))))..)))))))...... ( -28.60, z-score = -1.79, R) >consensus AAUCGGAAGGCAAGUCGGGCAUACCCUUCAGCCGAUCAAGUUAACAGGGUACUACCUACGUUUGCUGCUGCGUGAGUAGAAAGCAAGCUUUUUG .....................((((((..(((.......)))...))))))........(((((((.((((....))))..)))))))...... (-20.54 = -20.82 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:13 2011