| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,348,905 – 2,348,975 |
| Length | 70 |
| Max. P | 0.876034 |
| Location | 2,348,905 – 2,348,975 |
|---|---|
| Length | 70 |
| Sequences | 3 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 95.24 |
| Shannon entropy | 0.06559 |
| G+C content | 0.52381 |
| Mean single sequence MFE | -11.03 |
| Consensus MFE | -10.05 |
| Energy contribution | -9.83 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.876034 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2348905 70 - 22422827 ACAUGAGACCCUCCCCAGAUGUGAAGACCCUCCACUCUUCCGCUACUCAAUUCAAUUGUCUCAAACCCCG ...((((((........((.(((((((........)))).)))...)).........))))))....... ( -10.43, z-score = -2.30, R) >droEre2.scaffold_4644 2297383 70 - 2521924 ACUUGAGACCCUCCCCAGAUGUGAAGACCCUCCACUCUUCCGCUUCUCAAUUCAAUUGUCUCAAACCCCG ..(((((((.......(((.(((((((........)))).))).)))..........)))))))...... ( -13.13, z-score = -3.28, R) >droYak2.chrX 15772495 70 + 21770863 ACUUGGGACCCACCCCAGAUGUGAAGACCCUCCACUCUUCCGCCACUCAAUUCAAUUGUCUCAAACCCCG ..(((((((........((((.(((((........)))))...)).)).........)))))))...... ( -9.53, z-score = -0.26, R) >consensus ACUUGAGACCCUCCCCAGAUGUGAAGACCCUCCACUCUUCCGCUACUCAAUUCAAUUGUCUCAAACCCCG ...((((((........((.(((((((........)))).)))...)).........))))))....... (-10.05 = -9.83 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:12 2011