| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,347,918 – 2,348,021 |
| Length | 103 |
| Max. P | 0.685137 |
| Location | 2,347,918 – 2,348,021 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 74.50 |
| Shannon entropy | 0.46615 |
| G+C content | 0.43886 |
| Mean single sequence MFE | -31.22 |
| Consensus MFE | -18.00 |
| Energy contribution | -18.53 |
| Covariance contribution | 0.54 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.685137 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2347918 103 + 22422827 --GACAACAUGCAAUUUGUGUUGGCCAC-------AUAGCGGCAACUAGCUGCAACUAGCAAUAAACACCUUUUAGUUGGCUCUUAAUGGGCAACAUGUUGCUGCUGUGAAA-- --..((((((.......))))))....(-------(((((((((((..((((....))))...............((((.(((.....)))))))..))))))))))))...-- ( -35.30, z-score = -2.37, R) >droEre2.scaffold_4644 2296379 103 + 2521924 --GACAACAUGCAAUUUGUGUUGGCCAC-------AGAGCUGCAACUAGCUGCAACUAGCAAUAAACACCUAUUAGUUGGCUCUUAAUGGGCAACAUGUUGCUGCUGUGAAA-- --.(((.((.(((((..((((((.(((.-------(((((..(((((.((((....))))((((......))))))))))))))...))).))))))))))))).)))....-- ( -32.50, z-score = -1.37, R) >droYak2.chrX 15771431 110 - 21770863 --GACAACAUGCAAUUUGUGUUGGCCACCAGCCACAGAGCUGCAACUAGCUGCAAGUAGCAAUAAACACCUAUUAGUUGGCUCUUAAUGGGCAACAUGUUGCUGCUGUGAAA-- --.......((((.((((((((((...)))).))))))((((....))))))))((((((((((....((((((((.......)))))))).....))))))))))......-- ( -32.50, z-score = -0.09, R) >droSec1.super_10 2120329 100 + 3036183 --GACAACAUGCAAUUUGUGCUGACCAC-------AUAGCGGCAACUAGCUGCAACUAGCAAUAAACACCUAUUAGUUGGCUCUUAAUGGGCAACAUGUUGC---UGUGAAA-- --.....((.(((.....)))))....(-------(((((((((....((((....))))...............((((.(((.....))))))).))))))---))))...-- ( -26.00, z-score = -0.54, R) >droSim1.chrX 1666333 103 + 17042790 --GACAACAUGCAAUUUGUGUUGGCCAC-------AUAGCGGCAACUAGCUGCAACUAGCAAUAAACACCUAUUAGUUGGCUCUUAAUGGGCAACAUGUUGCUGUUGUGAAA-- --.((((((.(((((..((((((.(((.-------...(((((.....)))))..(((((((((......)))).))))).......))).)))))))))))))))))....-- ( -36.20, z-score = -2.78, R) >droPer1.super_11 184680 105 - 2846995 GUGGCACAAUCUGUGGAAUGUUGCACAA-------AUGGGAAUGGGAAAUGGGAAAUGGGA--GAACUGUUAUUCGAUAACAAAAGACAUGUUGCUGUCGACUGUUGUGCUGCC (..(((((((..((.((.....(((...-------(((......(...((.((((((((..--...))))).))).))..)......)))..)))..)).)).)))))))..). ( -24.80, z-score = -0.71, R) >consensus __GACAACAUGCAAUUUGUGUUGGCCAC_______AUAGCGGCAACUAGCUGCAACUAGCAAUAAACACCUAUUAGUUGGCUCUUAAUGGGCAACAUGUUGCUGCUGUGAAA__ ....((((((.......))))))............(((((.(((((..((((....))))...............((((.(((.....)))))))..))))).)))))...... (-18.00 = -18.53 + 0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:11 2011