| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,347,790 – 2,347,880 |
| Length | 90 |
| Max. P | 0.724867 |
| Location | 2,347,790 – 2,347,880 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 66.58 |
| Shannon entropy | 0.57264 |
| G+C content | 0.45637 |
| Mean single sequence MFE | -26.69 |
| Consensus MFE | -10.84 |
| Energy contribution | -10.82 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2347790 90 + 22422827 ---------GCCAAAAUUGCGAUGGCAAU------AUGUUGCUAGUUCCCAACAUGACGU--CCAUUGUUGCUCGUC-UGGCAACAUGCC-GCUUCUGUGUAUUACCAA----- ---------........((((..(((..(------((((((((((....(((((((....--.)).))))).....)-))))))))))..-)))....)))).......----- ( -24.40, z-score = -1.52, R) >droEre2.scaffold_4644 2296245 96 + 2521924 ---------GCUAAAAUGGCUUAGGCAUUUUACUUAUGUUGCUAGUUUCUAACAUGACGU--CUAUUGUUGUUCGUC-UGGCAACAUGCC-GCUGCCGUGUAUUACCAA----- ---------......(((((...((((.........(((((((((...(.((((..(((.--....))))))).).)-))))))))))))-...)))))..........----- ( -26.80, z-score = -2.15, R) >droYak2.chrX 15771294 99 - 21770863 ---------GCUUAAAU----AAGGCAUUUUACUUAUGUUGCUAGUUCCUAACAUGUUGUUUCCAUUGUUAUUUGGC-UAGCAACAUGCC-GCUGCUGUGUGUUACCAUUACAA ---------.......(----((.((((......(((((((((((((..(((((...((....)).)))))...)))-))))))))))..-......)))).)))......... ( -23.24, z-score = -0.98, R) >droSec1.super_10 2120199 90 + 3036183 ---------GCCAAAAUUGCGCAGGCAAU------AUGUUGCUAGUUCCCAACAUGACGU--CCAUUGUUGCUCGUC-UGGCAACAUGCC-GCCGCUGUGUAUUACCAA----- ---------........(((((((((..(------((((((((((....(((((((....--.)).))))).....)-))))))))))..-)))..)))))).......----- ( -29.50, z-score = -2.35, R) >droSim1.chrX 1666203 90 + 17042790 ---------GCCAAAAUUGCGCAGGCAAU------AUGUUGCUAGUUCCCAACAUGACGU--CCAUUGUUGCUCGUC-UGGCAACAUGCC-GCCGCUGUGUAUUACCAA----- ---------........(((((((((..(------((((((((((....(((((((....--.)).))))).....)-))))))))))..-)))..)))))).......----- ( -29.50, z-score = -2.35, R) >droPer1.super_11 184537 106 - 2846995 GAUGAGGAAACAGGAACAGCGCUGGCAGA--AUUCAAGGAGCUGGCUUGUC-UAAAAAGU--CGAUUGUUGCACGCAACAACAAUGGGGCAGCCCUUAUACAGUUUACGUC--- ((((.(....)..((((.((....))...--....((((.((((.((((.(-(....)).--)(.((((((....)))))))...))).)))))))).....)))).))))--- ( -26.70, z-score = -0.17, R) >consensus _________GCCAAAAUUGCGCAGGCAAU______AUGUUGCUAGUUCCCAACAUGACGU__CCAUUGUUGCUCGUC_UGGCAACAUGCC_GCCGCUGUGUAUUACCAA_____ .......................(((.........((((((........))))))...........(((((((......))))))).....))).................... (-10.84 = -10.82 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:10 2011