| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,308,532 – 2,308,615 |
| Length | 83 |
| Max. P | 0.820868 |
| Location | 2,308,532 – 2,308,615 |
|---|---|
| Length | 83 |
| Sequences | 6 |
| Columns | 88 |
| Reading direction | forward |
| Mean pairwise identity | 89.62 |
| Shannon entropy | 0.20335 |
| G+C content | 0.37106 |
| Mean single sequence MFE | -13.55 |
| Consensus MFE | -11.14 |
| Energy contribution | -11.33 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.820868 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2308532 83 + 22422827 ----GUCUCCCAGCCCUCGAACAUAAAUUUGCAACAAUUAAAAACAAAGUUAAUUAAAAUUUAUGUGCGACAGUUUCU-GCACUCUCG ----.......(((..(((.((((((((((.....((((((........)))))).)))))))))).)))..)))...-......... ( -12.00, z-score = -2.00, R) >droSim1.chrX 1637805 86 + 17042790 -GUCUUCUCCCAGCCCUCGAACAUAAAUUUGCAACAAUUAAAAACAAAGUUAAUUAAAAUUUAUGUGCGACAGUUUCU-GCACUCUCG -..........(((..(((.((((((((((.....((((((........)))))).)))))))))).)))..)))...-......... ( -12.00, z-score = -1.97, R) >droSec1.super_10 2080586 83 + 3036183 -GUCUUCUCC-AGCCCUCGAACAUAAAUUUGCA--CAUUAAAAACAAAGUUAAUUAAAAUUUAUGUGCGACAGUUUCU-GCACUCUCG -.........-(((..(((.((((((((((...--.(((((........)))))..)))))))))).)))..)))...-......... ( -12.10, z-score = -1.86, R) >droYak2.chrX 15735798 88 - 21770863 AUCGCUCGCCCAGCCCUCGAACAUAAAUUUGCAACAAUUAAAAACAAAGUUAAUUAAAAUUUAUGUGCGACAGUUUCUCGCACUCUCG .......((..(((..(((.((((((((((.....((((((........)))))).)))))))))).)))..)))....))....... ( -13.80, z-score = -1.78, R) >droEre2.scaffold_4644 2260743 87 + 2521924 GUCGGUCUGCCAGCCCUCGAACAUAAAUUUGCAACAAUUAAAAACAAAGUUAAUUAAAAUUUAUGUGCGACAGUUGCU-GCACUCUCG ...((..(((((((..(((.((((((((((.....((((((........)))))).)))))))))).)))..))))..-)))..)).. ( -18.10, z-score = -1.89, R) >droAna3.scaffold_12929 2216329 82 + 3277472 ----AUUGCCCGCCCUUCGAACAUAAAUUUGCGACAAUUAAAAACAAAGUUAAUUAAAAUUUAUGUGCGACAGUU-CU-GCACACUCG ----..(((..(..(((((.((((((((((.....((((((........)))))).)))))))))).))).))..-).-)))...... ( -13.30, z-score = -1.45, R) >consensus ____GUCUCCCAGCCCUCGAACAUAAAUUUGCAACAAUUAAAAACAAAGUUAAUUAAAAUUUAUGUGCGACAGUUUCU_GCACUCUCG ...........(((..(((.((((((((((.....((((((........)))))).)))))))))).)))..)))............. (-11.14 = -11.33 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:07 2011