| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,307,099 – 2,307,207 |
| Length | 108 |
| Max. P | 0.516151 |
| Location | 2,307,099 – 2,307,207 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 59.29 |
| Shannon entropy | 0.71389 |
| G+C content | 0.55762 |
| Mean single sequence MFE | -34.50 |
| Consensus MFE | -11.65 |
| Energy contribution | -13.69 |
| Covariance contribution | 2.04 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2307099 108 - 22422827 UCUUAGGAGGUGCUACCUAGUUACUCUUCACAUCUUAAUGGUAAACGG--GGUGAGCACGCAUCUCUAGCGGAUUCGCGAGUUCGCAUUCGAGCAUGCAAAUCCCUCUGG .....(((((((((((((..(((((.((........)).)))))...)--))).)))))(((((((..(((((((....)))))))....))).))))......)))).. ( -34.20, z-score = -1.88, R) >droEre2.scaffold_4644 2259382 97 - 2521924 UCGGAGGAGGUG-------------CAUCCCAUCCGGCUGGUGAAGGGCUGAGCAGCACGCCUCUCCGGCGGAUUCGCGAGUUCGCCGCCGCGCAUGCAAAUCCCUUCGG .(((((((..((-------------(((.(....((((.((((....(((....))).)))).....((((((((....)))))))))))).).)))))..).)))))). ( -39.40, z-score = 0.22, R) >droSec1.super_10 2079230 107 - 3036183 UCGUAGGAGGUGCUACCCAG-UACUCUUCACAUCUGGAUGGUAAACGG--GUUGAGCACGCAUCUCUAGCGGAUUCGCGACCUUGCAGUCGAGCAUGCAAGUUCCUCCGG .((.((((((((((((((..-((((.((((....)))).))))...))--))..)))))(((((((..(((....)))(((......)))))).))))...))))).)). ( -39.10, z-score = -1.95, R) >droSim1.chrX 1636435 107 - 17042790 UCGUAGGAGGUGCUACCCAG-UACUCUUCACAUCUGGAUGGUAAUCGG--GUUGAGCACGCAUCUCUAGUGGAUUCGCGAACUUGCAGUCGAGUAUGCAAAUCCCUCCGG .....(((((((((((((..-((((.((((....)))).))))...))--))..)))))...........(((((.(((.(((((....))))).))).))))))))).. ( -37.10, z-score = -1.92, R) >droPer1.super_25 207320 81 + 1448063 ------------------------UUCGUGGACGCGCUCAGAGAAGAG--GGCGAGUAAACACCAGAGAAAGACUAGC---UUCGGGGCCGAAGCUCUUGAUACCCUAAC ------------------------(((.(((.(((.(((......)))--.))).(....).)))..))).....(((---((((....))))))).............. ( -22.70, z-score = -0.39, R) >consensus UCGUAGGAGGUGCUACC_AG_UACUCUUCACAUCUGGAUGGUAAACGG__GGUGAGCACGCAUCUCUAGCGGAUUCGCGAGUUCGCAGUCGAGCAUGCAAAUCCCUCCGG .....(((((((((.............(((........))).............)))))...........(((((.(((.(((((....))))).))).))))))))).. (-11.65 = -13.69 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:06 2011