| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,284,700 – 2,284,781 |
| Length | 81 |
| Max. P | 0.550010 |
| Location | 2,284,700 – 2,284,781 |
|---|---|
| Length | 81 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 76.27 |
| Shannon entropy | 0.37973 |
| G+C content | 0.39132 |
| Mean single sequence MFE | -15.06 |
| Consensus MFE | -12.04 |
| Energy contribution | -11.52 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.550010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2284700 81 - 22422827 -GUUUUUUCUAUUACG-------AGUAUAAAGGCAGACAUUUUCAAUUAAAUUUCGGCUUUACUU------------UUUUUCUGGCCGGACCCCACGGCG -..............(-------((((...((((.((.((((......)))).)).)))))))))------------........((((.......)))). ( -14.60, z-score = -0.96, R) >droEre2.scaffold_4644 2245277 77 - 2521924 ---GCUUUUUUUCU---------AUUAUAAAGGCAGACAUUUUCAAUUAAAUUUCGGCUUUGCUU------------UUUUUCUGACUGGACCCCACGGCG ---(((.....(((---------((((.(((((((((.....................)))))))------------))....))).))))......))). ( -8.60, z-score = 0.59, R) >droYak2.chrX 15719723 92 + 21770863 ---GUUUUCUGCUGC------UUUUUAUAGAGGCAGACAUUUUCAAUUAAAUUUCGGCCUUACUUUUUCUUUUCUUAUUUUUUUGGCUGGACCCCACGGCG ---....((((((.(------(......)).))))))...............(((((((.........................))))))).......... ( -16.41, z-score = -1.07, R) >droSec1.super_10 2065224 75 - 3036183 -------UCCAUUACG-------AGUAUAAAGGCUGACAUUUUCAAUUAAAUUUCGGCUUUACUU------------UUUUUUUGGCCGGACCCCAUGGCG -------........(-------((((...(((((((.((((......)))).))))))))))))------------........((((.......)))). ( -16.00, z-score = -1.39, R) >droSim1.chrX 1621528 89 - 17042790 GCUGUUUUCCCUUACGAGUAUAAAGUAUAAAGGCAGACAUUUUCAAUUAAAUUUCGGCUUUACUU------------UUUUUUUGGCCGGACCCCACGGCG (((((..(((....((((...((((((...((((.((.((((......)))).)).)))))))))------------)...))))...)))....))))). ( -19.70, z-score = -1.44, R) >consensus ___GUUUUCUAUUACG_______AGUAUAAAGGCAGACAUUUUCAAUUAAAUUUCGGCUUUACUU____________UUUUUUUGGCCGGACCCCACGGCG .............................(((((.((.((((......)))).)).)))))........................((((.......)))). (-12.04 = -11.52 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:04 2011