| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,260,802 – 2,260,986 |
| Length | 184 |
| Max. P | 0.956823 |
| Location | 2,260,802 – 2,260,913 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 97.08 |
| Shannon entropy | 0.04028 |
| G+C content | 0.33333 |
| Mean single sequence MFE | -27.07 |
| Consensus MFE | -26.60 |
| Energy contribution | -26.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956823 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2260802 111 + 22422827 ACAAUAAUAUCACGUCACAUCAAAGCGUGAAAUUCAUUUUCGAUACGAUGGGUAUGCAUUAUUGUAUUAUUGGAAAUAUACAGUUGCAAAUGUUGCAGCAAGUGUAUUACG--- .((((((((((((((.........)))))).(((((((........)))))))...........))))))))(.(((((((.((((((.....))))))..))))))).).--- ( -26.60, z-score = -1.66, R) >droSim1.chrX_random 1221844 114 + 5698898 ACAAUAAUAUCACGUCACAUCAAAGCGUGAAAUUCAUUUUCGAUUCGAUGGGUAUGCAUUAUUGUAUUAUUGGAAAUAUACAGUUGCAAAAGUUGCAGCAAGUGUAUUACGAUC ((((((((.((((((.........)))))).(((((((........)))))))....))))))))...((((..(((((((.((((((.....))))))..))))))).)))). ( -27.30, z-score = -2.08, R) >droSec1.super_10 2041518 114 + 3036183 ACAAUAAUAUCACGUCACAUCAAAGCGUGAAAUUCAUUUUCGAUUCGAUGGGUAUGCAUUAUUGUAUUAUUGGAAAUAUACAGUUGCAAAAGUUGCAGCAAGUGUAUUACGAUC ((((((((.((((((.........)))))).(((((((........)))))))....))))))))...((((..(((((((.((((((.....))))))..))))))).)))). ( -27.30, z-score = -2.08, R) >consensus ACAAUAAUAUCACGUCACAUCAAAGCGUGAAAUUCAUUUUCGAUUCGAUGGGUAUGCAUUAUUGUAUUAUUGGAAAUAUACAGUUGCAAAAGUUGCAGCAAGUGUAUUACGAUC .((((((((((((((.........)))))).(((((((........)))))))...........))))))))(.(((((((.((((((.....))))))..))))))).).... (-26.60 = -26.60 + -0.00)
| Location | 2,260,802 – 2,260,913 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 97.08 |
| Shannon entropy | 0.04028 |
| G+C content | 0.33333 |
| Mean single sequence MFE | -21.87 |
| Consensus MFE | -21.73 |
| Energy contribution | -22.07 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.866074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2260802 111 - 22422827 ---CGUAAUACACUUGCUGCAACAUUUGCAACUGUAUAUUUCCAAUAAUACAAUAAUGCAUACCCAUCGUAUCGAAAAUGAAUUUCACGCUUUGAUGUGACGUGAUAUUAUUGU ---....(((((.((((..........)))).)))))............((((((((((((..((((((....((((.....))))......))))).)..))).))))))))) ( -20.00, z-score = -0.55, R) >droSim1.chrX_random 1221844 114 - 5698898 GAUCGUAAUACACUUGCUGCAACUUUUGCAACUGUAUAUUUCCAAUAAUACAAUAAUGCAUACCCAUCGAAUCGAAAAUGAAUUUCACGCUUUGAUGUGACGUGAUAUUAUUGU .......(((((.((((..........)))).)))))............((((((((((((..((((((((.((..((.....))..)).))))))).)..))).))))))))) ( -22.80, z-score = -1.84, R) >droSec1.super_10 2041518 114 - 3036183 GAUCGUAAUACACUUGCUGCAACUUUUGCAACUGUAUAUUUCCAAUAAUACAAUAAUGCAUACCCAUCGAAUCGAAAAUGAAUUUCACGCUUUGAUGUGACGUGAUAUUAUUGU .......(((((.((((..........)))).)))))............((((((((((((..((((((((.((..((.....))..)).))))))).)..))).))))))))) ( -22.80, z-score = -1.84, R) >consensus GAUCGUAAUACACUUGCUGCAACUUUUGCAACUGUAUAUUUCCAAUAAUACAAUAAUGCAUACCCAUCGAAUCGAAAAUGAAUUUCACGCUUUGAUGUGACGUGAUAUUAUUGU .......(((((.((((..........)))).)))))............((((((((((((..((((((((.((..((.....))..)).))))))).)..))).))))))))) (-21.73 = -22.07 + 0.33)
| Location | 2,260,876 – 2,260,986 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.78 |
| Shannon entropy | 0.09948 |
| G+C content | 0.41389 |
| Mean single sequence MFE | -28.23 |
| Consensus MFE | -27.97 |
| Energy contribution | -27.97 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.896399 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2260876 110 + 22422827 AAUAUACAGUUGCAAAUGUUGCAGCAAGUGUAUUACG---------GACUAC-GACUACUGAAACCCAAGUUUCUCAGCUGAAUUGCAGCUGUUGAACAACACUGGGAAAAUGACCAAUU (((((((.((((((.....))))))..))))))).((---------.....)-)..........((((.((((..((((((.....))))))..)))).....))))............. ( -28.60, z-score = -2.02, R) >droSim1.chrX_random 1221918 120 + 5698898 AAUAUACAGUUGCAAAAGUUGCAGCAAGUGUAUUACGAUCCACGACGACUACUGACUACUGAAACCCAAGUUUCUCAGCUGAAUUGCAGCUGUUGAACAACACUGGGGAAAUGACCAAUU (((((((.((((((.....))))))..)))))))..............................((((.((((..((((((.....))))))..)))).....))))............. ( -28.00, z-score = -1.21, R) >droSec1.super_10 2041592 120 + 3036183 AAUAUACAGUUGCAAAAGUUGCAGCAAGUGUAUUACGAUCCACGACGACUACUGACUACUGAAACCCAAGUUUCUCAGCUGGAUUGCAGCUGUUGAACAACACUGGGGAAAUGACCAAUU (((((((.((((((.....))))))..)))))))..............................((((.((((..((((((.....))))))..)))).....))))............. ( -28.10, z-score = -0.86, R) >consensus AAUAUACAGUUGCAAAAGUUGCAGCAAGUGUAUUACGAUCCACGACGACUACUGACUACUGAAACCCAAGUUUCUCAGCUGAAUUGCAGCUGUUGAACAACACUGGGGAAAUGACCAAUU (((((((.((((((.....))))))..)))))))..............................((((.((((..((((((.....))))))..)))).....))))............. (-27.97 = -27.97 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:09:02 2011