| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,754,368 – 9,754,420 |
| Length | 52 |
| Max. P | 0.939298 |
| Location | 9,754,368 – 9,754,420 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 92.31 |
| Shannon entropy | 0.10596 |
| G+C content | 0.41667 |
| Mean single sequence MFE | -12.13 |
| Consensus MFE | -11.23 |
| Energy contribution | -11.23 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.939298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9754368 52 + 23011544 UACACAAUCUGCAAGUUCGCAAAAUCGUGAAAGUGCAGGAAAUCCUUUGAUG .......((((((..(((((......)))))..))))))............. ( -14.80, z-score = -3.17, R) >droSim1.chr2L 9532686 52 + 22036055 GCUACAAUCUGCAAGUUCGCAAAAUCCUGAAAGUGCAGGAAAUUCUUCGAUG .......((((((..((((........))))..))))))............. ( -10.80, z-score = -1.37, R) >droSec1.super_3 5201587 52 + 7220098 GCUACAAUCUGCAAGUUCGCAAAAUCCUGAAAGUGCAGGAAAUUCUUCGAUG .......((((((..((((........))))..))))))............. ( -10.80, z-score = -1.37, R) >consensus GCUACAAUCUGCAAGUUCGCAAAAUCCUGAAAGUGCAGGAAAUUCUUCGAUG .......((((((..((((........))))..))))))............. (-11.23 = -11.23 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:53 2011