| Sequence ID | dm3.chr2L |
|---|---|
| Location | 857,550 – 857,651 |
| Length | 101 |
| Max. P | 0.992252 |
| Location | 857,550 – 857,651 |
|---|---|
| Length | 101 |
| Sequences | 13 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 77.38 |
| Shannon entropy | 0.47850 |
| G+C content | 0.42927 |
| Mean single sequence MFE | -30.65 |
| Consensus MFE | -22.31 |
| Energy contribution | -22.05 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.53 |
| SVM RNA-class probability | 0.992252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 857550 101 + 23011544 GAAUUACUUGGGCCAAGGGAAUGCAAACUGUG--------AUCAU-------CCCGAAAGUUUGUUCGUUUGGCUUAAGUUAUUUUCAUGUCCG-ACUAAAGCGCCACGUGGUGGAG-- (((..((((((((((((.((..(((((((...--------.((..-------...)).))))))))).))))))))))))....))).......-.......((((....))))...-- ( -31.00, z-score = -1.96, R) >droSim1.chr2L_random 38990 101 + 909653 GAAUUACUUGGGCCAAGGGAAUGCAAACUGUG--------AUCAU-------CCCGAAAGUUUGUUCGUUUGGCUUAAGUUAUUUUCAUGUCCG-ACUAAAGCGCCACGUGGUAGAG-- (((..((((((((((((.((..(((((((...--------.((..-------...)).))))))))).))))))))))))....))).......-.(((..(((...)))..)))..-- ( -29.80, z-score = -1.96, R) >droSec1.super_14 828183 101 + 2068291 GAAUUACUUGGGCCAAGGGAAUGCAAACUGUG--------AUCAU-------CCCGAAAGUUUGUUCGUUUGGCUUAAGUUAUUUUCAUGUCCG-ACUAAAGCGCCACGUGGUAGAG-- (((..((((((((((((.((..(((((((...--------.((..-------...)).))))))))).))))))))))))....))).......-.(((..(((...)))..)))..-- ( -29.80, z-score = -1.96, R) >droYak2.chr2L 841575 99 + 22324452 GAAUUACUUGGGCCAAGGGAAUGCAAACUGUG--------AUG---------CCUAGUAGUUUGUUCGUUUGGCUUAAGUUAUUUUCAUGUCCG-ACUAAAGCGCCACGUGGUGGAG-- (((..((((((((((((.((..((((((((..--------...---------.....)))))))))).))))))))))))....))).......-.......((((....))))...-- ( -31.20, z-score = -2.08, R) >droEre2.scaffold_4929 914716 99 + 26641161 GAAUUACUUGGGCCAAGGGAAUGCAAACUGUG--------AUG---------CCUAGUAGUUUGUUCGUUUGGCUUAAGUUAUUUUCAUGUCCG-ACUAAAGCGCCACGUCGAGGAG-- (((..((((((((((((.((..((((((((..--------...---------.....)))))))))).))))))))))))....)))...((((-((...........)))).))..-- ( -29.60, z-score = -1.75, R) >droAna3.scaffold_12916 2747021 104 + 16180835 GAAUUACUUGGGCCAAGGGAAUUCAAACUGUG--------AUCGC----AAUGCUAGAAGUUUGUUCGUUUGGCUUAAGUUAUUUUCAUGUCCG-UUGCAAACGCCACGUGGUGGAG-- (((..((((((((((((.(((..((((((...--------...((----...))....))))))))).))))))))))))....)))...((((-..((.........))..)))).-- ( -31.30, z-score = -1.88, R) >dp4.chr4_group3 5649128 106 + 11692001 GAAUUACUUGGGCCAGGGGAAUUCAAACUGUG--------AUCGC----AAUGCAAAAAGUUUGUUCGUUUGGCUUAAGUUAUUUUCAUGCCUC-AAGUAAACGCCACGUGGGUUUGAG ((((.((((((((((((.(((..((((((.((--------.....----....))...))))))))).)))))))))))).))))(((.(((.(-(.((.......)).))))).))). ( -30.30, z-score = -1.74, R) >droPer1.super_1 7140286 106 + 10282868 GAAUUACUUGGGCCAGGGGAAUGCAAACUGUG--------AUCGC----AAUGCAAAAAGUUUGUUCGUUUGGCUUAAGUUAUUUUCAUGCCUC-AAGUAAACGCCACGUGGGUUUGAG ((((.((((((((((((.((..(((((((.((--------.....----....))...))))))))).)))))))))))).))))(((.(((.(-(.((.......)).))))).))). ( -31.40, z-score = -1.70, R) >droWil1.scaffold_180772 6627339 111 - 8906247 GAAUUACUUGGGCCAAGGGAAUUCAAACUGUG----AAUUAUUUC--AAAAUGCAAAAAGUUUGUUCGUUUGGCUUAAGUUAUUUUCAUGUCCGUACAAUUGCGACACGUGGUGAAG-- ((((.((((((((((((.(((..((((((.((----((....)))--)..........))))))))).)))))))))))).))))((((((.((((....))))..)))))).....-- ( -31.90, z-score = -3.02, R) >droMoj3.scaffold_6500 8544082 104 - 32352404 GAAUUACUUGGGCCAAGGGAAUGCAAACUGUUCGAAAAGCAUU---------GCAAAAAGUUUGUUCGUUUGGCUUAAGUUAUUUUCAUGCCCG-A-UAAAACGCCACGUGGUGG---- (((..((((((((((((.((..(((((((...(((......))---------).....))))))))).))))))))))))....))).......-.-.....((((....)))).---- ( -31.30, z-score = -2.06, R) >droVir3.scaffold_12963 19405408 103 + 20206255 AAAUUACUUGGGCCAAGGGAAUGCAAACUGUC---AACGCAUU---------GCAAUAAGUUUGUUCGUUUGGCUUAAGUUAUUUUCAUGCCCA-A-CAUAACGCCACGUGGUGGAG-- ((((.((((((((((((.((..(((((((...---...((...---------))....))))))))).)))))))))))).)))).........-.-.....((((....))))...-- ( -29.90, z-score = -1.61, R) >droGri2.scaffold_15252 7270338 113 + 17193109 GAAUUACUUGGGCCAAGUGGAUGUAAACUGUG-AAAGCGCAUUUUGCAUAUAACAAAAAGUUUGUUCGUUUGGCUUAAGUUAUUUUCAUGCCCG-A-UAUAACGCCACGUGGGUGA--- (((..((((((((((((((.(((((((.((((-....)))).)))))))..(((((.....)))))))))))))))))))....))).......-.-.....((((.....)))).--- ( -32.30, z-score = -1.85, R) >anoGam1.chr3R 942475 96 - 53272125 GGAUUACUUAAGCCACGCGUACAGAAACUUUU----UAGAAUG-----------AAAGAGUUUGUUCGUUUGGCUCGAGUUAUGCCGGUUCUAA----AUUGCAGCAUGUUGUUG---- ((...(((..(((((.(((.(((((..(((((----......)-----------))))..))))).))).)))))..)))....))........----....((((.....))))---- ( -28.70, z-score = -2.58, R) >consensus GAAUUACUUGGGCCAAGGGAAUGCAAACUGUG________AUC_________GCAAAAAGUUUGUUCGUUUGGCUUAAGUUAUUUUCAUGUCCG_ACUAAAGCGCCACGUGGUGGAG__ ((((.((((((((((((.(((..((((((.............................))))))))).)))))))))))).))))(((((.................)))))....... (-22.31 = -22.05 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:12 2011