| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,254,519 – 2,254,578 |
| Length | 59 |
| Max. P | 0.849073 |
| Location | 2,254,519 – 2,254,578 |
|---|---|
| Length | 59 |
| Sequences | 8 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 74.91 |
| Shannon entropy | 0.51559 |
| G+C content | 0.55115 |
| Mean single sequence MFE | -17.30 |
| Consensus MFE | -10.49 |
| Energy contribution | -10.79 |
| Covariance contribution | 0.30 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.849073 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2254519 59 + 22422827 GGAGCGUCUCUCGCUCAUGUGAGGCACGUCCUCCUCAGGCAUCAUGCUUUGGACAUUAG (((.(((.((((((....)))))).))))))(((..((((.....)))).)))...... ( -20.10, z-score = -1.80, R) >droSim1.chrX_random 1214887 59 + 5698898 GGAGCGUCUCUCGCUCAUGUGAGGCACGUCCUCCCCAGGCAUCAUGUCUAGAGAGAUAG ...((((.((((((....)))))).)))).(((.(.((((.....)))).).))).... ( -18.40, z-score = -0.61, R) >droSec1.super_10 2030718 59 + 3036183 GGAGCGUCUCUCGCUCAUGUGAGGCACGUCCUCCUCAGGCAUCAUGCUUUGGACAUUAG (((.(((.((((((....)))))).))))))(((..((((.....)))).)))...... ( -20.10, z-score = -1.80, R) >droYak2.chrX 15687572 56 - 21770863 GGAGCGUCACUCGCUCAUGAGAGGCACGUCCUC---AGGCAUCAUGCUUGGGACAUUAG .(((((.....)))))...........((((.(---((((.....)))))))))..... ( -21.70, z-score = -2.71, R) >droEre2.scaffold_4644 2214769 56 + 2521924 GGAGCGUCUCUCGCUCAUGUGAGGCACGUCCUC---AGGCAUCAUGCUUUGGACAUUAG .....((.((((((....)))))).))((((..---((((.....)))).))))..... ( -18.50, z-score = -1.52, R) >dp4.chrXL_group1a 6076207 56 + 9151740 GGAGCGUCUCUCGCUUAUGUGCGACACGUCCUC---AGGUGGCCCGCGCUCGAAAUUAG .((((((...((((......))))(((......---..)))....))))))........ ( -16.80, z-score = -0.38, R) >droPer1.super_25 153123 56 - 1448063 GGAGCGUCUCUCGCUUAUGUGCGACACGUCCUC---AGGUGGCCCGCGUUCGAAAUUAG .((((((...((((......))))(((......---..)))....))))))........ ( -14.40, z-score = 0.26, R) >droWil1.scaffold_180777 1943136 56 + 4753960 GGAGCUUCUAUAAC--AUUUUAGGCACGUCUCU-UCACAAAAUGGACCUUGCUCAAUAU .((((.((((....--....))))...((((.(-(.....)).))))...))))..... ( -8.40, z-score = -1.05, R) >consensus GGAGCGUCUCUCGCUCAUGUGAGGCACGUCCUC___AGGCAUCAUGCUUUGGACAUUAG (((.(((.((((((....)))))).))))))............................ (-10.49 = -10.79 + 0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:59 2011