| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,244,502 – 2,244,601 |
| Length | 99 |
| Max. P | 0.957862 |
| Location | 2,244,502 – 2,244,601 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 124 |
| Reading direction | forward |
| Mean pairwise identity | 68.18 |
| Shannon entropy | 0.54863 |
| G+C content | 0.38859 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -11.74 |
| Energy contribution | -12.33 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.957862 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2244502 99 + 22422827 GUGCUUCGAUUUGAACUU-------ACAAUUUAAU-UAGAC-----------AUACAGCACGUAACAAACCU-AUAAGGUUGAUCGC-----AAGCAGUUCCCACAGGAAGUGCAUAGUUGCUC (((((((...(((((...-------....))))).-..)).-----------....)))))(((((.((((.-....))))......-----..(((.((((....)))).)))...))))).. ( -24.50, z-score = -2.30, R) >droSim1.chrX 1602266 99 + 17042790 CUGCUUAGAGUUGAACUU-------ACAAUUUAAU-UAGGC-----------AUACAGCAAGUAACAAACCU-AUAAGGUUGAUCGC-----AAGCAGUUCCCACAGGAAGUGCAUAGUUGCUC .((((((((((((.....-------.))))))...-)))))-----------)...(((((.((...((((.-....))))......-----..(((.((((....)))).))).)).))))). ( -26.40, z-score = -2.23, R) >droSec1.super_10 2020773 99 + 3036183 CUGCUUAGAGUUGAACUU-------ACAAUUUAAU-UAGGC-----------AUACAGCAAGUAACAAACCU-AUAAGGUUGAUCGC-----AAGCAGUUCCCACAGGAAGUGCAUAGUUGCUC .((((((((((((.....-------.))))))...-)))))-----------)...(((((.((...((((.-....))))......-----..(((.((((....)))).))).)).))))). ( -26.40, z-score = -2.23, R) >droYak2.chrX 15676796 120 - 21770863 GUGCUGCGAUUUGAACUUUUUUUGAGCAAUAAAAUGUAUGUCUGUAUGUCUAAUACAGCACGUAACAAACCU-AUAAGGUUAAUCGCG---CAAGCAGUUCCCACAGGAAGUGCAUAGUUGUCG .(((.((((((.......................(((((((((((((.....)))))).)))).)))((((.-....)))))))))))---)).(((.((((....)))).))).......... ( -33.40, z-score = -2.23, R) >droEre2.scaffold_4644 2204705 99 + 2521924 GUGCUUCGAUUUGAACUU-------ACAAUUUAAU-UAGAC-----------AUACAGCACGUAACAAACCU-UUAAGGUUAAUCGC-----AAGCGGUUCCCAGAGGAAGUGCAUAGUUGCCC (((((((...(((((...-------....))))).-..)).-----------....)))))(((((.((((.-....))))......-----..(((.((((....)))).)))...))))).. ( -23.40, z-score = -1.82, R) >droVir3.scaffold_12928 5272550 95 - 7717345 ------------------------AUAAAUAAAAUGGAGUUUU-----UUCAAUUCUAAAAGGGAGAAACAUCAAAAAGUGGAACGAUGUGUAAUUCGUCCAUGUGUAAAAUGCAUACUAGGAU ------------------------..........((..(((((-----(((...........))))))))..))....(((((.(((........))))))))((((.....))))........ ( -16.40, z-score = -1.07, R) >consensus GUGCUUCGAUUUGAACUU_______ACAAUUUAAU_UAGGC___________AUACAGCAAGUAACAAACCU_AUAAGGUUGAUCGC_____AAGCAGUUCCCACAGGAAGUGCAUAGUUGCUC .............................................................(((((.(((((....))))).............(((.((((....)))).)))...))))).. (-11.74 = -12.33 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:59 2011