| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,197,161 – 2,197,262 |
| Length | 101 |
| Max. P | 0.989589 |
| Location | 2,197,161 – 2,197,262 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 79.27 |
| Shannon entropy | 0.34575 |
| G+C content | 0.40648 |
| Mean single sequence MFE | -30.18 |
| Consensus MFE | -18.24 |
| Energy contribution | -18.00 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.989589 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2197161 101 - 22422827 -----------AACUCGAACUCACCGCACACGAGGCGAGAGUGCU--UGGUGGAACAAUAAAUAUAUUUGUGGGGCAUUAGCCUCUAGAUAUUUGUUUGAUAUGCG-CUUUAGAG -----------..(((...(((.((........)).)))(((((.--..((.((((((.....(((((((.(((((....)))))))))))))))))).))..)))-))...))) ( -32.00, z-score = -3.06, R) >droSim1.chrX 1553094 101 - 17042790 -----------AACUCGAACUCACCGCACACGAGGCGAGAGUGCU--CGGUGGAACAAUAAAUAUAUUUGUGGGGCAUUAGCCUCUAGAUAUUUGUUUGAUAUGCG-CUUUAGAG -----------..(((...(((.((........)).)))(((((.--..((.((((((.....(((((((.(((((....)))))))))))))))))).))..)))-))...))) ( -32.00, z-score = -2.86, R) >droSec1.super_10 1982376 101 - 3036183 -----------AACUCGAACUCACCGCACACGAGGCGAGAGUGCU--CGGUGGAACAACAAAUAUAUUUGUGGGGCAUUAGCCUCUAGAUAUUUGUUUGAUAUGCG-CUUUAGAG -----------..(((...(((.((........)).)))(((((.--..((.((((((.....(((((((.(((((....)))))))))))))))))).))..)))-))...))) ( -32.00, z-score = -2.83, R) >droYak2.chrX 15640955 114 + 21770863 GAAGAAACAGCAACACGAACUCACCGCACACGAGUUAAGAGUGCUCGCGGUGGAACAAUAAAUAUAUUUUUGGGGCAUUAGCCUCUAGAUAUUUGUUUGAUAUGCG-CUUUAGAG ((((.....(((...((((((((((((....((((.......)))))))))))..........((((((..(((((....))))).))))))..)))))...))).-)))).... ( -30.90, z-score = -2.46, R) >droPer1.super_26 905746 91 + 1349181 -----------------UAUUCAUACCAUAU-ACAUAUGUAUGU-----AUGUACAUACAUAUAU-UUUUUGGGGCAUUAGCCUCAAGAUAUUUGUUUGAUAUGCGAUUUUAAAG -----------------........((((((-..((((((((((-----....))))))))))..-.(((((((((....)))))))))..........))))).)......... ( -24.00, z-score = -3.51, R) >consensus ___________AACUCGAACUCACCGCACACGAGGCGAGAGUGCU__CGGUGGAACAAUAAAUAUAUUUGUGGGGCAUUAGCCUCUAGAUAUUUGUUUGAUAUGCG_CUUUAGAG .....................((((((((.(.......).))))....))))....(((((((((......(((((....)))))...))))))))).................. (-18.24 = -18.00 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:52 2011