Locus 12793

Sequence ID dm3.chrX
Location 2,196,627 – 2,196,723
Length 96
Max. P 0.573140
window17583

overview

Window 3

Location 2,196,627 – 2,196,723
Length 96
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 83.00
Shannon entropy 0.23624
G+C content 0.41713
Mean single sequence MFE -25.83
Consensus MFE -19.04
Energy contribution -20.60
Covariance contribution 1.56
Combinations/Pair 1.06
Mean z-score -1.70
Structure conservation index 0.74
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.16
SVM RNA-class probability 0.573140
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 2196627 96 + 22422827
GGUUUUUUUUU----UUAAUGUUUUUGUGUUGCAUUCGAAUUUCGAGGCGAUCCGAUCCGAUUCGAUCCGCAAAAGCAAGAGCAGGAGCAACAGCAAGAG
.((((((.(((----(...((((((((((((((.((((.....))))))))...((((......)))))))))))))))))).))))))........... ( -23.10, z-score =  -0.53, R)
>droSec1.super_10 1981860 87 + 3036183
-GGUUUUUUUUGUUUUUAAUGUUUUUGUGUUGCAUUCGAAUUUCGGGGCGAUCCGAUCCGAUUCGAUCCGCAAAAGCAAGAGCAAGAG------------
-......(((((((((...((((((((((......((((((((((((....)))))...)))))))..))))))))))))))))))).------------ ( -27.00, z-score =  -2.54, R)
>droSim1.chrX 1552570 95 + 17042790
GGUUUUUUUUUGUUUUUAAUGUUUUUGUGUUGCAUUCGAAUUUCGAGGCGAUC-----CGAUUCGAUCCGCAAAAGCAAGAGCAGGAGCAAGAGCAAGAG
.......(((((((((...(((((((((.((((.((((.....))))((((((-----......))).)))....))))..)))))))))))))))))). ( -27.40, z-score =  -2.03, R)
>consensus
GGUUUUUUUUUGUUUUUAAUGUUUUUGUGUUGCAUUCGAAUUUCGAGGCGAUCCGAUCCGAUUCGAUCCGCAAAAGCAAGAGCAGGAGCAA_AGCAAGAG
......((((((((((...((((((((((..((.((((.....))))))((((.((......))))))))))))))))))))))))))............ (-19.04 = -20.60 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:51 2011