| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,195,759 – 2,195,865 |
| Length | 106 |
| Max. P | 0.699285 |
| Location | 2,195,759 – 2,195,865 |
|---|---|
| Length | 106 |
| Sequences | 11 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 79.26 |
| Shannon entropy | 0.44716 |
| G+C content | 0.37924 |
| Mean single sequence MFE | -26.15 |
| Consensus MFE | -13.85 |
| Energy contribution | -13.56 |
| Covariance contribution | -0.29 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.699285 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 2195759 106 + 22422827 -UUCUUAUUUU-CGUAUUUUGUUUUAUUGGCACUCGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUUGCUGAUGAAGACG------CGCGUUCUCUUUUGUCUG- -..........-................((((..(((((((.((..((((.((((.((((((((....)))))))))))))))).)))))------))))........))))..- ( -23.80, z-score = -1.29, R) >dp4.chrXL_group1a 225173 107 + 9151740 -UCUUUAUUUU-CGUAUCUUGUUUUAUUAGCACUUGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUUGCUGAUGAAGACGA-----CGCGGACUCUUACGGCUA- -........((-((..((...(((((((((((...((((((((((.....))))))))((((((....)))))))))))))))))))..))-----..))))............- ( -26.80, z-score = -1.69, R) >droPer1.super_26 904231 107 - 1349181 -UCUUUAUUUU-CGUAUCUUGUUUUAUUAGCACUUGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUUGCUGAUGAAGACGA-----CGCGGACUCUUACGGCUA- -........((-((..((...(((((((((((...((((((((((.....))))))))((((((....)))))))))))))))))))..))-----..))))............- ( -26.80, z-score = -1.69, R) >droAna3.scaffold_12929 2101916 115 + 3277472 CUCUCCAUUUUUCGUAUUUUGUUUUAUUGGCACUUGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUUGAUGAUGAAGACGACGCGACGCGCGCUCUUCUCCCUCU .......................((((..((......((((((((.....))))))))((((((....))))))))..)))).(((((((.(((...))))).)))))....... ( -25.10, z-score = -0.65, R) >droEre2.scaffold_4644 2161680 106 + 2521924 -UUCUCAUUUU-CGUAUUUUGUUUUAUUGGCAUUCGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUUGCUGAUGAAGACG------CGCGUUCUCUUUUGUCUG- -..........-................((((..(((((((.((..((((.((((.((((((((....)))))))))))))))).)))))------))))........))))..- ( -24.50, z-score = -1.49, R) >droSec1.super_10 1981000 106 + 3036183 -UUCUCAUUUU-CGUAUUUUGUUUUAUUGGCACUCGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUUGCUGAUGAAGACG------CGCGUUCUCUUUUGUCUG- -..........-................((((..(((((((.((..((((.((((.((((((((....)))))))))))))))).)))))------))))........))))..- ( -23.80, z-score = -1.17, R) >droSim1.chrX 1551693 106 + 17042790 -UUCUCAUUUU-CGUAUUUUGUUUUAUUGGCACUCGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUUGCUGAUGAAGACG------CGCGUUCUCUUUUGUCUG- -..........-................((((..(((((((.((..((((.((((.((((((((....)))))))))))))))).)))))------))))........))))..- ( -23.80, z-score = -1.17, R) >droMoj3.scaffold_6359 4236809 108 + 4525533 ---UUUUGGUUUUCAUUAUUUUUUUAUUGCCAUUUGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUCGCUGAUGGAGACGC--GCGCGCGC--UCUUUAACGCCA ---...((((..................))))...(((((((((.(((((.((((.((((((((....))))))))))))))))))).)))--))))(((.--.......))).. ( -33.67, z-score = -2.84, R) >droVir3.scaffold_12928 5717758 110 + 7717345 ---UUUUGGUUUUCAUUAUUUUUUUAUUGCCACUUGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUCGCUGAUGAAGACGC--GCGCGCGCACUCUUUAACGCCA ---...((((..................))))..(((((((((.((...((((((.((((((((....)))))))))))))).......))--)))))))))............. ( -29.67, z-score = -1.68, R) >droWil1.scaffold_180588 354536 95 + 1294757 --------UUUUUUUUUUGGGUUUUAUUGCCACUUGCGUGUGCUGCUAUUUAGCGCAUUUAAUUUAAUAAUUAAGUCGCUGAUGAAGACA---ACGCGCUG--CUUUU------- --------...........(((......)))....((((((.((.....((((((.((((((((....))))))))))))))...))...---))))))..--.....------- ( -25.10, z-score = -1.93, R) >droGri2.scaffold_14853 4863493 100 + 10151454 ---------UUAUUUUUUUUCUUUUAUUGCCACUUGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUCGCUGAUGGAGACGU--GUGCGC----UCUUUAACACUA ---------..........................(((((..(..(((((.((((.((((((((....)))))))))))))))))....).--.)))))----............ ( -24.60, z-score = -2.23, R) >consensus _U_UUUAUUUU_CGUAUUUUGUUUUAUUGGCACUUGCGUGUGCUGCCAUUUAGCGCAUUUAAUUUAAUAAUUAAGUUGCUGAUGAAGACG______CGCGUUCUCUUUUGCCUG_ ..................................(((((((.((..((((.((((.((((((((....)))))))))))))))).)))))......))))............... (-13.85 = -13.56 + -0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:49 2011