| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,193,915 – 2,194,020 |
| Length | 105 |
| Max. P | 0.667205 |
| Location | 2,193,915 – 2,194,020 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 96.82 |
| Shannon entropy | 0.04373 |
| G+C content | 0.47607 |
| Mean single sequence MFE | -31.30 |
| Consensus MFE | -29.64 |
| Energy contribution | -29.20 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.667205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2193915 105 - 22422827 GGACUUUGUUUUGCGCGCUGAUUGUGGUUCGCUGGCUAAUUAUAGAUUUUCAGGGGUGGUAGUGUGCGGAAUGAAUUAGCGGGUACGCUGUUUUGUUGUUCCUUG (((.((..((((((((((((.((.(((....(((........)))....))).))....))))))))))))..)).(((((....))))).........)))... ( -29.70, z-score = -1.27, R) >droSim1.chrX 1549815 104 - 17042790 GGACUUUGUUUUGCGCGCUGAUUGUGGCUCGCUGGCUAAUUAUAGAUUUUCAGGGGU-GUAGUGUGCGGAAUGAAUUAGCGGCUUCGCCGUUUUGUUGUUCCUUG ............((((((((......((((.((((..((((...)))).))))))))-.))))))))((((..(...((((((...))))))...)..))))... ( -32.10, z-score = -1.37, R) >droSec1.super_10 1979127 104 - 3036183 GGACUUUGUUUUGCGCGCUGAUUGUGGCUCGCUGGCUAAUUAUAGAUUUUCAGGGGU-GUAGUGUGCGGAAUGAAUUAGCGGCUUCGCCGUUUUGUUGUUCCUUG ............((((((((......((((.((((..((((...)))).))))))))-.))))))))((((..(...((((((...))))))...)..))))... ( -32.10, z-score = -1.37, R) >consensus GGACUUUGUUUUGCGCGCUGAUUGUGGCUCGCUGGCUAAUUAUAGAUUUUCAGGGGU_GUAGUGUGCGGAAUGAAUUAGCGGCUUCGCCGUUUUGUUGUUCCUUG ............((((((((......((((.((((..((((...)))).))))))))..))))))))((((..(...(((((.....)))))...)..))))... (-29.64 = -29.20 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:48 2011