| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,750,029 – 9,750,086 |
| Length | 57 |
| Max. P | 0.671508 |
| Location | 9,750,029 – 9,750,086 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 73.34 |
| Shannon entropy | 0.48093 |
| G+C content | 0.48270 |
| Mean single sequence MFE | -12.78 |
| Consensus MFE | -7.25 |
| Energy contribution | -8.05 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671508 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9750029 57 + 23011544 AACCUGUUCCCGUAGA-ACCAACGAAAACUGAACCGAUCGCAGCUGGAGCAGAUUGAA ...((((((((((...-....)))....(((.........)))..)))))))...... ( -11.20, z-score = -1.31, R) >droSim1.chr2L 9528384 57 + 22036055 AACCUGUUCCGGUAGC-ACCGACGAAAACUGAACCGUUCGCAGCUGGAGCAGAUUGAA ...((((((((((.((-...((((..........)))).)).))))))))))...... ( -20.20, z-score = -3.05, R) >droSec1.super_3 5197296 57 + 7220098 AACCUUUUCCGGUAGC-AUCAACGAAAACUGAACCGAACGCAGCUGGAGCAGAUUGAA ...((.(((((((.((-......................)).))))))).))...... ( -10.55, z-score = -0.32, R) >droYak2.chr2L 12438465 57 + 22324452 AACCUGUUCUGGUAGC-ACCAACAACGACUGAACCUAACGCAGCUGGAGCAGAUUGAA ...((((((..((.((-......................)).))..))))))...... ( -14.25, z-score = -1.53, R) >droAna3.scaffold_12943 1181701 58 + 5039921 GACCAGUUGGAACAUUUACAGAAAAUGAAACAGCCGCCUUCGGAUGAAGCAGAUGAAA .....((((...(((((.....)))))...)))).((.(((....)))))........ ( -7.70, z-score = -0.08, R) >consensus AACCUGUUCCGGUAGC_ACCAACGAAAACUGAACCGAACGCAGCUGGAGCAGAUUGAA ...((((((((((.............................))))))))))...... ( -7.25 = -8.05 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:52 2011